CX295067

Overview
NameCX295067
Unique NameCX295067
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.173e-22
Identity = 71/202 (35.15%), Postives = 94/202 (46.53%), Query Frame = 3
Query:    3 DAFITALNSYPEFGR----TDTNREVAAFFAHVTHETTD---------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGF--DGLNSPETVARDRVISFKTALWFWMTY-------------------VHSALNQ--GFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DAFI A NS+P FG     T   +E+AAFF   +HET           +C++++  ++D               YYGRGPIQLT   NY  AG+ IG   + +N+P+ VA D +ISFKTA+WFWMT                      +A N+  G+G     ING  ECG         R+  Y  YC    V  G  L+C
Sbjct:   57 DAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDR--------------YYGRGPIQLTHQSNYERAGQGIGVGQELVNNPDLVATDPIISFKTAIWFWMTEQDNKPSCHNVIIGQWTPSPKDTAANRVPGYGVITNIINGQFECGMGPNTAAESRIGFYRRYCGMLNVPTGENLDC 244          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.173e-22
Identity = 71/208 (34.13%), Postives = 91/208 (43.75%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRT---DTN-REVAAFFAHVTHETTD-------------FCYIEEKNKADPHC---TSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWM----------------------TYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            DA+  A   YP FG T   DT  RE+AAFFA  + ET+              +C + E N    +C   T   YPC     YYGRGP+QL  N NY + G  +G + L+ PE VA D V+SF+ ALWFWM                        + +    GFG     I    EC    + +  +R+  Y  YC    VDPG  L C
Sbjct:   93 DAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVAD--YYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWMNPHSTGAPSCHEVITGEWSPSEADIEAGRKPGFGMLTNIITNGGECTKDGKTRQQNRIDYYLRYCDMLQVDPGDNLYC 298          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.772e-21
Identity = 67/176 (38.07%), Postives = 81/176 (46.02%), Query Frame = 3
Query:    3 DAFITALNSYPEF---GRTDTN-REVAAFFAHVTHETTDFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALN---------------QGFGETIRKINGPAECGGRNRDQVLDRVRRYTD 455
            DAFI A  S+P F   G TD   REVAAF A  +HETT            P      Y   +   Y+GRGPIQ++ N NY  AG+AIG D L +P+ V  D  + FKTALWFWMT        H  +                 G+G     I+G  ECG      V DR+  Y D
Sbjct:   23 DAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTG---------GWPTAPDGPYELGSTSDYFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMTPQSPKPSSHDVITGRWSPSSTDKAAGRVPGYGVLTNIIDGGVECGKGQESHVADRIGYYKD 189          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: IAMY_COILA (Alpha-amylase inhibitor/endochitinase (Fragments) OS=Coix lachryma-jobi PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 61/139 (43.88%), Postives = 74/139 (53.24%), Query Frame = 3
Query:   78 FAHVTHETTDFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMTYVHSALNQGFGETIRKINGPAECGGRNRDQVLDRVRRYTDYCKRFGVDPGPRL 494
            FAHVTHET +  Y       DP  T  Q PCA GK YYGRGPIQ++ N NY  AGRAIG DGL +P+ VA+D +  +KTAL F                   +NG     G +     + V  Y  YC++ GVDPGP L
Sbjct:   24 FAHVTHETGNNAY------CDPSKT--QKPCAAGKKYYGRGPIQISXNYNYGPAGRAIGMDGLGNPDRVAQDALDDYKTALXF------------------LVNGEEAVPGLS---AANAVSYYRQYCQQLGVDPGPNL 133          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 1.872e-20
Identity = 57/131 (43.51%), Postives = 73/131 (55.73%), Query Frame = 3
Query:    6 AFITALNSYPEFGR----TDTNREVAAFFAHVTHETTDFCYIEEKNKADPH-----------------CTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT 335
            +F+ A  S+P FG         REVAAF AH++  T+     E  +  +PH                 CTS  +PCA GK Y  RGPIQLT N NY  AG+AIG D + +P+ V +D +ISFKTALWFWM+
Sbjct:  159 SFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSG----ERSDVENPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMS 285          
BLAST of CX295067 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 59/192 (30.73%), Postives = 79/192 (41.15%), Query Frame = 3
Query:    3 DAFITALNSYPEFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIDAGRAIGFDGLNSPETVARDRVISFKTALWFWMT------YVHSALNQ---------------GFGETIRKINGPAECG-GRNRDQVLDRVRRYTDYCKRFGVDPGPRLEC 500
            +AFI+A   +P+FG T  +    RE+AAF    +HET  +                 +P A G   Y  G   +  N NY   G  +    L  PE V  D  I+FKTALWFWMT        H+ + +               G+G     ING  ECG G   +   +R+  Y  YC   G   G  L+C
Sbjct:  115 NAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGW-----------------WPAAQGD-QYDWGYCHM--NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMTPQSPKPSCHAVITESWTPSAADSEAGRVPGYGVITNIINGGIECGQGGPNNANENRIGFYKTYCDSLGTTYGSNLDC 286          
The following BLAST results are available for this feature:
BLAST of CX295067 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CHIA_SOLLC1.173e-2235.15Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI8_POPTR1.173e-2234.13Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHIT_AVESA3.772e-2138.07Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
IAMY_COILA1.872e-2043.88Alpha-amylase inhibitor/endochitinase (Fragments) ... [more]
AGI_URTDI1.872e-2043.51Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIB_POPTR8.423e-1330.73Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]

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Properties
Property NameValue
Genbank descriptionC05068C02SK DroRLeaf1 Citrus clementina cDNA clone C05068C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295067 ID=CX295067; Name=CX295067; organism=Citrus clementina; type=EST; length=678bp
GAGATGCATTTATTACTGCTCTCAATTCGTATCCTGAATTTGGCAGAACT
GATACTAATCGTGAAGTGGCAGCATTTTTTGCCCATGTCACTCATGAAAC
AACAGATTTTTGCTACATAGAAGAGAAGAATAAAGCAGATCCTCATTGTA
CATCTCCACAATACCCATGTGCCAATGGTAAATTCTACTACGGCCGGGGA
CCGATTCAGCTCACCGGAAATGGAAACTACATAGACGCCGGAAGGGCCAT
CGGTTTCGACGGTCTGAACTCTCCGGAAACGGTAGCCAGGGACCGTGTCA
TATCTTTCAAGACCGCTTTGTGGTTTTGGATGACATACGTGCACTCAGCA
CTAAACCAAGGTTTTGGTGAAACAATTCGGAAAATTAATGGTCCTGCTGA
ATGCGGTGGCCGAAACCGTGACCAAGTTCTGGATCGTGTTAGGCGTTACA
CTGATTATTGCAAAAGATTTGGTGTTGATCCTGGACCACGTCTTGAATGC
TGAATAGATATTTTGTACAAAAAATATTACAGTATATGTATTATATTGTA
TCACAATAAGCCAGAGTTATTTCAAACAACTTTCTCTGTTTGGTAACTCT
GACGGAATAATTTTCTTGTACCTGATCATGAAATAAAGAGAAAAATAATG
GATAATTAAAAAAAAAAAAAAAAAAAAA
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