CX295071

Overview
NameCX295071
Unique NameCX295071
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length676
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295071 vs. ExPASy Swiss-Prot
Match: BRD3_HUMAN (Bromodomain-containing protein 3 OS=Homo sapiens GN=BRD3 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.288e-18
Identity = 56/176 (31.82%), Postives = 96/176 (54.55%), Query Frame = 1
Query:   37 IAKEKLKDRHVASIEKQQQDAFHREEAAGR-RMQELKRQFAAIFRQITQHK---WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEELVM---ASILVLSGEKTRGGGSEGTT 543
            +A+ +   R +   +K  +D    + A  + ++ E  R   +I R++   K   +AWPF  PVD E L LHDY+++I+ PMD ST+K KMDG++   Y + +   ADVRL+F N  KYN    +V  MA+ L + FE ++ ++  + +E   +   A+ +V  G ++     E ++
Sbjct:  276 VARRESGGRPIKPPKKDLEDGEVPQHAGKKGKLSEHLRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGRE---YPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPVEAPALPAPAAPMVSKGAESSRSSEESSS 448          

HSP 2 Score: 75.8702 bits (185), Expect = 2.216e-13
Identity = 47/151 (31.13%), Postives = 76/151 (50.33%), Query Frame = 1
Query:  121 GRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEELVMASILVLSGEKTRGGGSEGTT*YATHSGGCP 573
            GR+  +L+     + + + +H++AWPF  PVD   L L DY+++I+ PMD  TIK ++   +   Y +  E   D   +F N   YN   DD+ +MA++L + F +K  Q +P+   EL+  +      +   G  S GT   A  S   P
Sbjct:   33 GRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRL---ENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQ-MPQEEVELLPPAPKGKGRKPAAGAQSAGTQQVAAVSSVSP 179          
BLAST of CX295071 vs. ExPASy Swiss-Prot
Match: FSH_DROME (Homeotic protein female sterile OS=Drosophila melanogaster GN=fs(1)h PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 3.903e-18
Identity = 42/89 (47.19%), Postives = 58/89 (65.17%), Query Frame = 1
Query:  187 WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 453
            +AWPF  PVD E LGLHDY+++I+KPMD  T+K KMD ++   Y++  E  ADVRL+F N  KYN    DV  M + L + FE ++  +
Sbjct:  499 YAWPFYKPVDAEMLGLHDYHDIIKKPMDLGTVKRKMDNRE---YKSAPEFAADVRLIFTNCYKYNPPDHDVVAMGRKLQDVFEMRYANI 584          

HSP 2 Score: 82.8037 bits (203), Expect = 1.813e-15
Identity = 45/134 (33.58%), Postives = 75/134 (55.97%), Query Frame = 1
Query:  112 EAAGRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEELVMASILVLSGEK 513
            E  GR   +L+     + + I +H ++WPF  PVD + L L DY+++I++PMD  TIK ++   +   Y + +E   D   +F N   YN   +DV VMA++L + F +K ++ +PK  EEL +  +    G+K
Sbjct:   30 ERPGRNTNQLQYLIKTVMKVIWKHHFSWPFQQPVDAKKLNLPDYHKIIKQPMDMGTIKKRL---ENNYYWSAKETIQDFNTMFNNCYVYNKPGEDVVVMAQTLEKVFLQK-IESMPK--EELELEPVTAKGGKK 157          
BLAST of CX295071 vs. ExPASy Swiss-Prot
Match: BRD3_MOUSE (Bromodomain-containing protein 3 OS=Mus musculus GN=Brd3 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.098e-18
Identity = 51/149 (34.23%), Postives = 84/149 (56.38%), Query Frame = 1
Query:   37 IAKEKLKDRHVASIEKQQQDAFHREEAAGR-RMQELKRQFAAIFRQITQHK---WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVME 471
            +A+ +   R +   +K  +D    + A  + ++ E  R   +I R++   K   +AWPF  PVD E L LHDY+++I+ PMD ST+K KMD ++   Y + +   AD+RL+F N  KYN    +V  MA+ L + FE ++ ++  + ME
Sbjct:  275 VARRESGGRPIKPPKKDLEDGEVPQHAGKKGKLSEHLRHCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDSRE---YPDAQGFAADIRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDEPME 420          

HSP 2 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 39/119 (32.77%), Postives = 66/119 (55.46%), Query Frame = 1
Query:  121 GRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEEL 477
            GR+  +L+     + + + +H++AWPF  PVD   L L DY+++I+ PMD  TIK ++   +   Y +  E   D   +F N   YN   DD+ +MA++L + F +K  Q+  + +E L
Sbjct:   32 GRKTNQLQYMQNVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRL---ENNYYWSASECMQDFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQKVAQMPQEEVELL 147          
BLAST of CX295071 vs. ExPASy Swiss-Prot
Match: BRDT_MOUSE (Bromodomain testis-specific protein OS=Mus musculus GN=Brdt PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.658e-18
Identity = 58/186 (31.18%), Postives = 100/186 (53.76%), Query Frame = 1
Query:    4 NNQPNTSKSISIAKEKLKDRHVASI--EKQQQDAFHREEAAGRRMQELKRQFAAIFRQITQHK---WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEELVMASILVLSGEK-TRGGGSEGTT 543
            +  P T +        +K+  V ++  + QQQ   H+     +  ++LK   + I +++   K   +AWPF +PVD + LGLH+YY+V++ PMD  TIK KMD ++   Y++  E  ADVRL+F N  KYN    +V  MA++L + FE  + ++  + +E +    +   S +  +R   SE ++
Sbjct:  228 SESPPTLRETKPVNMPVKENTVKNVLPDSQQQ---HKVLKTVKVTEQLKH-CSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQE---YKDAYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKIPDEPIESMHACHLTTNSAQALSRESSSEASS 406          

HSP 2 Score: 76.2554 bits (186), Expect = 1.697e-13
Identity = 39/112 (34.82%), Postives = 61/112 (54.46%), Query Frame = 1
Query:  118 AGRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 453
            +GR   +L+     + + + +H ++WPF  PVD   L L DYY +I+ PMD +TIK +++ K    Y    E   D   +F N   YN   DD+ VMA++L + F +K  Q+
Sbjct:   24 SGRLTNQLQFLQRVVLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENK---YYEKASECIEDFNTMFSNCYLYNKTGDDIVVMAQALEKLFMQKLSQM 132          
BLAST of CX295071 vs. ExPASy Swiss-Prot
Match: Y3800_DICDI (Ankyrin repeat, bromo and BTB domain-containing protein DDB_G0293800 OS=Dictyostelium discoideum GN=DDB_G0293800 PE=4 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.618e-14
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = 1
Query:  184 KWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLP 459
            K +  F  PVD    G+ DY++VI+ PMD  TIK K+D     GY  +++  ADVRL+F+NA+ YN +   V   AK+LL  F++K+LQ  P
Sbjct:  536 KTSLAFQRPVDPLAEGIPDYFDVIKHPMDLGTIKGKLDNN---GYSTIKDFAADVRLMFENALTYNADSSPVWKHAKTLLNAFDQKFLQNFP 624          
BLAST of CX295071 vs. ExPASy Swiss-Prot
Match: BAZ2B_HUMAN (Bromodomain adjacent to zinc finger domain protein 2B OS=Homo sapiens GN=BAZ2B PE=1 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 4.938e-13
Identity = 47/151 (31.13%), Postives = 79/151 (52.32%), Query Frame = 1
Query:    1 DNNQPNTSKSISIAKEKLKDRHV---ASIEKQQQDAFHREEAAGRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKW 444
            D +  +TS S+    + LK R +    SI   +Q++F   +   R   +     + I  ++  H+ AWPF+ PV+++ +    Y +VI+KPMDFSTI+ K+       Y N+     DVRLVF N   +N++  D+     ++ + FE+KW
Sbjct: 2016 DEDSASTSSSLKRGNKDLKKRKMEENTSINLSKQESFTSVKKPKRDDSKDLALCSMILTEMETHEDAWPFLLPVNLKLVP--GYKKVIKKPMDFSTIREKLSSGQ---YPNLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 2161          
BLAST of CX295071 vs. ExPASy Swiss-Prot
Match: Y0170_DICDI (Bromodomain-containing protein DDB_G0270170 OS=Dictyostelium discoideum GN=DDB_G0270170 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 41/105 (39.05%), Postives = 62/105 (59.05%), Query Frame = 1
Query:  160 IFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQLLPKVMEE 474
            +  ++ +H+ + PF+  VD   LG+ DY++VI+ PMD  TIK  + G    GY  + +   D RLVF NA  YN   + VH+MA+SL + FE+ +    PKV+ E
Sbjct:  747 LLEELFEHQHSPPFLVAVDPYALGILDYFDVIKHPMDLGTIKASLIGG---GYDTIDKFAEDCRLVFSNAKTYNPSTNPVHIMAQSLEDVFEKGF----PKVLIE 844          
BLAST of CX295071 vs. ExPASy Swiss-Prot
Match: BAZ2B_CHICK (Bromodomain adjacent to zinc finger domain protein 2B OS=Gallus gallus GN=BAZ2B PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.423e-13
Identity = 47/154 (30.52%), Postives = 81/154 (52.60%), Query Frame = 1
Query:    1 DNNQPNTSKSISIAKEKLKDRHV---ASIEKQQQDAFHREEAAGRRMQELKRQFAAIFRQITQHKWAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKWLQL 453
            D +   TS S+   K + K R +    S+ + +Q+ F   +   R   +     + I  ++  H+ AWPF+ PV+++ +    Y +VI+KPMDFSTI++K+       Y NV     DVRLVF N   +N++  D+     ++ + FE+KW ++
Sbjct: 1978 DEDSATTSTSLKRGKTEPKKRKMDESVSVSQGKQENFTAIKKPKRDDSKDLAICSMILSELETHEDAWPFLLPVNLKLVP--GYKKVIKKPMDFSTIRDKLTSGQ---YPNVEAFSLDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKWTEI 2126          
BLAST of CX295071 vs. ExPASy Swiss-Prot
Match: YCK2_SCHPO (Bromodomain-containing protein C1450.02 OS=Schizosaccharomyces pombe GN=SPCC1450.02 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.130e-12
Identity = 34/86 (39.53%), Postives = 51/86 (59.30%), Query Frame = 1
Query:  187 WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKW 444
            +A+PF  PVD       DY++VI++PMD STI++K++  +   Y  + E  +D+ L+F N   YN     VHVM + L   F+EKW
Sbjct:  275 FAFPFYQPVDPVACDCPDYFDVIKEPMDLSTIQSKLNKNE---YSTLEEFESDILLMFNNCFTYNPPGTPVHVMGRQLENVFKEKW 357          
BLAST of CX295071 vs. ExPASy Swiss-Prot
Match: YK82_SCHPO (Bromodomain-containing protein C631.02 OS=Schizosaccharomyces pombe GN=SPAC631.02 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.539e-11
Identity = 34/90 (37.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query:  178 QHK-WAWPFMHPVDVEGLGLHDYYEVIEKPMDFSTIKNKMDGKDGTGYRNVREIYADVRLVFKNAMKYNDERDDVHVMAKSLLEKFEEKW 444
            QH+ +A+PF  PV+    G  DY++VI+ PMD  T++NK++  +   Y +++   AD+ L+FKN  K+N     VH+M K L   F++ W
Sbjct:  450 QHEAYAYPFYKPVNPTACGCPDYFKVIKHPMDLGTMQNKLNHNE---YASMKAFEADMVLMFKNCYKFNSAGTPVHLMGKKLESIFQKLW 536          
The following BLAST results are available for this feature:
BLAST of CX295071 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
BRD3_HUMAN2.288e-1831.82Bromodomain-containing protein 3 OS=Homo sapiens G... [more]
FSH_DROME3.903e-1847.19Homeotic protein female sterile OS=Drosophila mela... [more]
BRD3_MOUSE5.098e-1834.23Bromodomain-containing protein 3 OS=Mus musculus G... [more]
BRDT_MOUSE6.658e-1831.18Bromodomain testis-specific protein OS=Mus musculu... [more]
Y3800_DICDI2.618e-1443.48Ankyrin repeat, bromo and BTB domain-containing pr... [more]
BAZ2B_HUMAN4.938e-1331.13Bromodomain adjacent to zinc finger domain protein... [more]
Y0170_DICDI8.423e-1339.05Bromodomain-containing protein DDB_G0270170 OS=Dic... [more]
BAZ2B_CHICK8.423e-1330.52Bromodomain adjacent to zinc finger domain protein... [more]
YCK2_SCHPO7.130e-1239.53Bromodomain-containing protein C1450.02 OS=Schizos... [more]
YK82_SCHPO3.539e-1137.78Bromodomain-containing protein C631.02 OS=Schizosa... [more]

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Properties
Property NameValue
Genbank descriptionC05068C06SK DroRLeaf1 Citrus clementina cDNA clone C05068C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295071 ID=CX295071; Name=CX295071; organism=Citrus clementina; type=EST; length=676bp
GATAATAATCAACCAAACACTTCGAAAAGTATCTCAATTGCGAAGGAAAA
ATTGAAGGATAGACATGTTGCTAGCATTGAGAAGCAGCAGCAAGATGCAT
TTCATAGGGAAGAAGCTGCTGGAAGGAGGATGCAAGAACTTAAGCGCCAG
TTTGCTGCAATTTTTCGTCAGATCACTCAGCACAAGTGGGCATGGCCTTT
TATGCATCCTGTTGATGTTGAAGGTCTTGGTTTGCATGACTACTATGAGG
TTATTGAGAAGCCCATGGACTTTAGTACAATAAAGAATAAGATGGATGGT
AAGGATGGTACTGGGTACAGGAATGTGAGGGAGATATATGCTGATGTTAG
ATTGGTATTTAAGAATGCAATGAAATACAATGACGAAAGAGATGATGTCC
ATGTAATGGCAAAATCACTGTTGGAAAAATTTGAAGAAAAGTGGCTGCAG
CTTTTGCCTAAAGTAATGGAAGAGCTTGTGATGGCTTCCATACTTGTACT
TTCAGGAGAAAAGACAAGAGGAGGAGGAAGCGAAGGCACAACTTGATATG
CAACTCACTCAGGAGGCTGTCCAGACGAACAAAGCTAAGGAATTAAGAAG
TGAACTTAATGAAGTTGATATGCAACTCGAGAACCTCAGAGAAACAGTGA
TTCAGAAGTGCAGAAAAATGTCGACT
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