CX295149

Overview
NameCX295149
Unique NameCX295149
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295149 vs. ExPASy Swiss-Prot
Match: EMC3_YEAST (ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae GN=AIM27 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 2.108e-29
Identity = 68/194 (35.05%), Postives = 117/194 (60.31%), Query Frame = 3 
Query:  108 LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPD--PKI-VKEGQVIVRARNLRAGANFIAPKSFRARRVYFCNEENGLLHMPKGQAQNAQA-----QMFSDPNMA---MDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLI 656
            ++LD  ++ WVL+P+S+VMVL G+L+ ++  L+  S   +  P++ + E Q +  A+ L      ++  +F A++ +   +     H+ K + Q+          F+DP+M+   M+M K N++  IPQT+   WVN FF+GF+  ++PFPLT +F+ MLQ GI    +DV +VSS SWYF+++ GL  +++LI
Sbjct:    1 MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLIGNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQDGSQAGEVPNPFNDPSMSNAMMNMAKGNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWYFISVLGLNPVYNLI 194
[Close]
BLAST of CX295149 vs. ExPASy Swiss-Prot
Match: EMC3_YEAS7 (ER membrane protein complex subunit 3 OS=Saccharomyces cerevisiae (strain YJM789) GN=AIM27 PE=3 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 2.108e-29
Identity = 68/194 (35.05%), Postives = 117/194 (60.31%), Query Frame = 3 
Query:  108 LVLDTAIRDWVLIPLSVVMVLIGILRYFVSKLMRSSQVPD--PKI-VKEGQVIVRARNLRAGANFIAPKSFRARRVYFCNEENGLLHMPKGQAQNAQA-----QMFSDPNMA---MDMMKKNLSMIIPQTLTFAWVNFFFSGFVAAKIPFPLTQRFRSMLQNGIDLSTVDVSYVSSRSWYFLNLFGLRGLFSLI 656
            ++LD  ++ WVL+P+S+VMVL G+L+ ++  L+  S   +  P++ + E Q +  A+ L      ++  +F A++ +   +     H+ K + Q+          F+DP+M+   M+M K N++  IPQT+   WVN FF+GF+  ++PFPLT +F+ MLQ GI    +DV +VSS SWYF+++ GL  +++LI
Sbjct:    1 MLLDDQLKYWVLLPISIVMVLTGVLKQYIMTLITGSSANEAQPRVKLTEWQYLQWAQLLIGNGGNLSSDAFAAKKEFLVKDLTEERHLAKAKQQDGSQAGEVPNPFNDPSMSNAMMNMAKGNMASFIPQTIIMWWVNHFFAGFILMQLPFPLTAKFKEMLQTGIICQDLDVRWVSSISWYFISVLGLNPVYNLI 194
The following BLAST results are available for this feature:
BLAST of CX295149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
EMC3_YEAST2.108e-2935.05ER membrane protein complex subunit 3 OS=Saccharom... [more]
EMC3_YEAS72.108e-2935.05ER membrane protein complex subunit 3 OS=Saccharom... [more]

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Properties
Property NameValue
Genbank descriptionC05069B02SK PhIFruit1 Citrus clementina cDNA clone C05069B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295149 ID=CX295149; Name=CX295149; organism=Citrus clementina; type=EST; length=662bp
GAGGCTCCCTTGACCCCAAATCAAAACCACATAAACAAAAACGAAAAAAA
TCGAAATCGAGCACCCACAGGCACAGGCACAGGTACAGAGCATCAATGGC
GGAAGATCTGGTGCTTGACACGGCGATCAGAGACTGGGTGCTGATACCGC
TGTCAGTTGTGATGGTCCTCATCGGAATTCTCCGTTACTTCGTCTCTAAG
CTTATGCGCTCCTCTCAAGTGCCCGATCCTAAAATCGTTAAAGAAGGACA
AGTGATTGTTAGGGCGCGGAATTTGCGTGCTGGCGCTAATTTTATCGCTC
CAAAGTCTTTTCGCGCTCGCAGAGTTTATTTCTGTAACGAGGAAAATGGA
TTGTTGCATATGCCAAAGGGTCAGGCACAAAATGCGCAAGCGCAAATGTT
TTCCGATCCTAACATGGCAATGGACATGATGAAGAAAAATCTTTCAATGA
TCATACCCCAGACCCTTACTTTTGCTTGGGTCAACTTTTTCTTCTCTGGG
TTTGTTGCAGCCAAGATACCATTCCCACTGACTCAGAGGTTCAGGTCAAT
GTTACAAAATGGGATTGACTTGAGCACTGTTGATGTAAGCTATGTCAGTA
GTCGTTCATGGTACTTCCTCAATTTGTTTGGACTGAGGGGTTTATTTAGC
CTCATTCTGGGG
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