CX295212

Overview
NameCX295212
Unique NameCX295212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR2_YEAST (Methylenetetrahydrofolate reductase 2 OS=Saccharomyces cerevisiae GN=MET13 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.028e-23
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHG-IKTVHLYTLNMEK 539
            +DAG D IITQ+FYD D F+ + +  R  G+  PI+PGIMPI  Y  FLR   + +  IP   ++ L+PIKD++E V+  G +L  EMC+K+L  G +  +H+YT+N+EK
Sbjct:  179 IDAGGDFIITQMFYDVDNFINWCSQVRAAGMDVPIIPGIMPITTYAAFLRRAQWGQISIPQHFSSRLDPIKDDDELVRDIGTNLIVEMCQKLLDSGYVSHLHIYTMNLEK 288          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: METF_AQUAE (5,10-methylenetetrahydrofolate reductase OS=Aquifex aeolicus GN=metF PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 1.977e-19
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLN 530
            V+AGAD  ITQ+F+  D + +FV  C+  GI   I+PGIMPI N+K   +    C   IP  +   LE ++D  E VK  GI      C  ++ HG+  +H YTLN
Sbjct:  170 VEAGADFSITQMFFVNDYYYRFVEMCKNAGIDISIIPGIMPITNFKQIRKFASLCGATIPQSLIEKLEKVEDKPEEVKKIGIEFAINQCLDLIEHGVPGLHFYTLN 275          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: METF_SHIFL (5,10-methylenetetrahydrofolate reductase OS=Shigella flexneri GN=metF PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLN 530
            VDAGA+  ITQ F+D + +L+F + C   GI   I+PGI+P++N+K   +       +IPA +    + + D+ E  K  G ++  +M K +   G+K  H YTLN
Sbjct:  173 VDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYTLN 278          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: METF_ECOLI (5,10-methylenetetrahydrofolate reductase OS=Escherichia coli (strain K12) GN=metF PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.955e-15
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLN 530
            VDAGA+  ITQ F+D + +L+F + C   GI   I+PGI+P++N+K   +       +IPA +    + + D+ E  K  G ++  +M K +   G+K  H YTLN
Sbjct:  173 VDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPAWMAQMFDGLDDDAETRKLVGANIAMDMVKILSREGVKDFHFYTLN 278          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR2_SCHPO (Methylenetetrahydrofolate reductase 2 OS=Schizosaccharomyces pombe GN=met11 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 48/123 (39.02%), Postives = 66/123 (53.66%), Query Frame = 3
Query:  201 LIL*VDAGADLIITQLFYDTDMFLKFVNDCRQIGITC----PIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKIL------AHGIKTVHLYTLNMEK 539
            LI  V+AGAD IITQ+FY+ + F+KF N  R          PI+P IMPI +Y    RMT  C   +P+ +   L   K ++EA+K  G+    +M KKI+       HG    H  TLN+E+
Sbjct:  176 LIEKVEAGADFIITQIFYEPEAFIKFENFVRNHSSNALRNIPIIPAIMPIQSYGSLKRMTRLCGCSVPSSLMQRLNAAKPDDEAIKNIGVEHIVDMIKKIMDNVQGRVHGF---HFCTLNLER 295          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: METF_HAEIN (5,10-methylenetetrahydrofolate reductase OS=Haemophilus influenzae GN=metF PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLN 530
            +DAGA+ +ITQ F+D + +L+F + C  IGI   IVPGI+P+ N+K   +M  F   KIPA +  A + + ++          +  +M K +   G+   H YTLN
Sbjct:  171 IDAGANHVITQFFFDIENYLRFRDRCASIGIDTEIVPGILPVTNFKQLQKMASFTNVKIPAWLVKAYDGLDNDPTTRNLVAASVAMDMVKILSREGVNDFHFYTLN 276          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: METF_SALTY (5,10-methylenetetrahydrofolate reductase OS=Salmonella typhimurium GN=metF PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 8.597e-15
Identity = 37/106 (34.91%), Postives = 61/106 (57.55%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLN 530
            VDAGA+  ITQ F+D + +L+F + C   GI   I+PGI+P++N+K   +       +IP+ ++   E + ++ E  K  G ++  +M K +   G+K  H YTLN
Sbjct:  173 VDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKFADMTNVRIPSWMSLMFEGLDNDAETRKLVGANIAMDMVKILSREGVKDFHFYTLN 278          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: METF_NEIMB (5,10-methylenetetrahydrofolate reductase OS=Neisseria meningitidis serogroup B GN=metF PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.597e-15
Identity = 37/106 (34.91%), Postives = 60/106 (56.60%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLN 530
            +DAGA+ +ITQ F+D + +L+F + C  +GI   IVPGI+P+ N+K   +M      KIP+ ++   E + D++         +  +M K +   G+K  H YTLN
Sbjct:  171 IDAGANHVITQFFFDVERYLRFRDRCVMLGIDVEIVPGILPVTNFKQLGKMAQVTNVKIPSWLSQMYEGLDDDQGTRNLVAASIAIDMVKVLSREGVKDFHFYTLN 276          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: METF_PECCC (5,10-methylenetetrahydrofolate reductase OS=Pectobacterium carotovorum subsp. carotovorum GN=metF PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.501e-14
Identity = 36/106 (33.96%), Postives = 59/106 (55.66%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLN 530
            +DAGA+  ITQ F+D + +L+F + C   GI   IVPGI+P++N+K   +       ++P  +T   + + ++ E  K  G  +  +M K +   G+K  H YTLN
Sbjct:  173 IDAGANRAITQFFFDVESYLRFRDRCVATGIDVEIVPGILPVSNFKQLQKFATMTNVRVPNWMTTMFDGLDNDPETRKMVGASIAMDMVKILSREGVKDFHFYTLN 278          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: MTHR1_YEAST (Methylenetetrahydrofolate reductase 1 OS=Saccharomyces cerevisiae GN=MET12 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 5.572e-14
Identity = 47/114 (41.23%), Postives = 66/114 (57.89%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQ-IGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEP-IKDNEEAVKAYGIHLGAEMCKKI---LAHGIKTVHLYTLNMEK 539
            V+AGAD +ITQLFYD + FL F    R+ I    P+ PG+MPIN+Y  F R        IP  I +   P I+ ++ AVK+ G+ +  E+ ++I    +  IK  H YTLN+EK
Sbjct:  179 VEAGADFVITQLFYDVEKFLTFEMLFRERISQDLPLFPGLMPINSYLLFHRAAKLSHASIPPAILSRFPPEIQSDDNAVKSIGVDILIELIQEIYQRTSGRIKGFHFYTLNLEK 292          
The following BLAST results are available for this feature:
BLAST of CX295212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
MTHR2_YEAST5.028e-2345.45Methylenetetrahydrofolate reductase 2 OS=Saccharom... [more]
METF_AQUAE1.977e-1940.575,10-methylenetetrahydrofolate reductase OS=Aquife... [more]
METF_SHIFL2.955e-1535.855,10-methylenetetrahydrofolate reductase OS=Shigel... [more]
METF_ECOLI2.955e-1535.855,10-methylenetetrahydrofolate reductase OS=Escher... [more]
MTHR2_SCHPO3.859e-1539.02Methylenetetrahydrofolate reductase 2 OS=Schizosac... [more]
METF_HAEIN3.859e-1535.855,10-methylenetetrahydrofolate reductase OS=Haemop... [more]
METF_SALTY8.597e-1534.915,10-methylenetetrahydrofolate reductase OS=Salmon... [more]
METF_NEIMB8.597e-1534.915,10-methylenetetrahydrofolate reductase OS=Neisse... [more]
METF_PECCC2.501e-1433.965,10-methylenetetrahydrofolate reductase OS=Pectob... [more]
MTHR1_YEAST5.572e-1441.23Methylenetetrahydrofolate reductase 1 OS=Saccharom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05069H02SK PhIFruit1 Citrus clementina cDNA clone C05069H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295212 ID=CX295212; Name=CX295212; organism=Citrus clementina; type=EST; length=664bp
CGGCACGAGGATCATATCAAAGTGATCTTCTTTATCTGAAGAAAAAGGTC
TCTCTAATGTGTATTTCTTGTAATGCTTTGTCGTATACTTTGCGTGATCA
AAACATTAAAATCTTAATTAACAGCTGATGAAAATAGAAAATTGGTGATT
TATGTTGTTTGTCATTAATATAACAACGGATGGCTTGTGCTGATGGTCAA
CTTATTTTGTAGGTGGATGCTGGTGCAGATCTAATTATCACTCAACTATT
CTATGATACTGACATGTTTCTTAAGTTTGTGAATGACTGTCGCCAAATTG
GAATTACCTGCCCCATTGTTCCTGGAATTATGCCCATTAATAACTATAAG
GGTTTCTTGCGCATGACTGGCTTTTGCAAAACAAAGATACCAGCTGAGAT
TACTGCTGCCTTGGAGCCTATAAAGGACAATGAAGAAGCTGTTAAAGCCT
ATGGAATTCACCTTGGAGCTGAAATGTGCAAGAAAATTTTAGCTCATGGG
ATTAAGACTGTGCATCTTTATACTCTAAACATGGAGAAATCTGCATTAGC
TATATTATTGGTATCCTTATTGGGATTGTTATGGTGTTGTTTGTGATTAG
TACTTATCACTAAAGCTTGGTGTTCCTAATGATAGACATACATTTGCAGA
ATCTTGGTTTGATT
back to top