CX295212

Overview
NameCX295212
Unique NameCX295212
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length664
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: METF_STRLI (5,10-methylenetetrahydrofolate reductase OS=Streptomyces lividans GN=metF PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.621e-13
Identity = 35/104 (33.65%), Postives = 55/104 (52.88%), Query Frame = 3
Query:  219 AGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLN 530
            AGAD  ITQ+F+  D +L+  +     G   P++P +MP+ + K   R+        PAE+   +   KD+  AV++ GI    E C ++LA G+  +H  TLN
Sbjct:  184 AGADYAITQMFFQPDSYLRLRDRVAAAGCATPVIPEVMPVTSVKMLERLPKLSNASFPAELKERILTAKDDPAAVRSIGIEFATEFCARLLAEGVPGLHFITLN 287          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: METF_BUCBP (5,10-methylenetetrahydrofolate reductase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=metF PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.161e-13
Identity = 37/106 (34.91%), Postives = 58/106 (54.72%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLN 530
            V+AGA   ITQ F++ D FL+F + C +  IT  IVPGI PI+N+K  L+ +      IP  +      + ++    +  G  +  +M K + + GI++ H YTLN
Sbjct:  174 VEAGATRAITQFFFNIDCFLRFRDLCVKNNITIDIVPGIFPISNFKQLLKFSSVSNVSIPKWLCCMFHGLDNDLNTSRIIGSSIAIDMVKVLYSEGIRSFHFYTLN 279          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: METF_BUCAI (5,10-methylenetetrahydrofolate reductase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=metF PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.047e-13
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = 3
Query:  213 VDAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLN 530
            VDAGA   ITQ F++ + +L+F ++C +  I   I+PGI+P+ N++   R +     KIP  +      + D+    K  G  +  +M KK+   G+K  H YTLN
Sbjct:  173 VDAGASRAITQFFFNIESYLRFRDNCIKNKINIDIIPGILPVCNFQKLKRFSSMTNVKIPKWMLDMFNGLDDDIFTQKIIGSSIAIDMVKKLSCEGVKNFHFYTLN 278          
BLAST of CX295212 vs. ExPASy Swiss-Prot
Match: METF_BUCAP (5,10-methylenetetrahydrofolate reductase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=metF PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.518e-11
Identity = 33/105 (31.43%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  216 DAGADLIITQLFYDTDMFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEITAALEPIKDNEEAVKAYGIHLGAEMCKKILAHGIKTVHLYTLN 530
            DAGA+  ITQ F++ + +L+F ++C +  I   I+PGI+PI N++   + +      IP  +      + ++ E  K  G ++   + K +L  G+K  H YTLN
Sbjct:  174 DAGANRAITQFFFNVESYLRFRDNCIKNNINIEIIPGILPIYNFEQLKKFSSMTNVSIPKWMFEMFNGLDEDLETQKIIGSNIVINIVKTLLYEGVKNFHFYTLN 278          
The following BLAST results are available for this feature:
BLAST of CX295212 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
METF_STRLI1.621e-1333.655,10-methylenetetrahydrofolate reductase OS=Strept... [more]
METF_BUCBP6.161e-1334.915,10-methylenetetrahydrofolate reductase OS=Buchne... [more]
METF_BUCAI8.047e-1333.965,10-methylenetetrahydrofolate reductase OS=Buchne... [more]
METF_BUCAP1.518e-1131.435,10-methylenetetrahydrofolate reductase OS=Buchne... [more]

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Properties
Property NameValue
Genbank descriptionC05069H02SK PhIFruit1 Citrus clementina cDNA clone C05069H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295212 ID=CX295212; Name=CX295212; organism=Citrus clementina; type=EST; length=664bp
CGGCACGAGGATCATATCAAAGTGATCTTCTTTATCTGAAGAAAAAGGTC
TCTCTAATGTGTATTTCTTGTAATGCTTTGTCGTATACTTTGCGTGATCA
AAACATTAAAATCTTAATTAACAGCTGATGAAAATAGAAAATTGGTGATT
TATGTTGTTTGTCATTAATATAACAACGGATGGCTTGTGCTGATGGTCAA
CTTATTTTGTAGGTGGATGCTGGTGCAGATCTAATTATCACTCAACTATT
CTATGATACTGACATGTTTCTTAAGTTTGTGAATGACTGTCGCCAAATTG
GAATTACCTGCCCCATTGTTCCTGGAATTATGCCCATTAATAACTATAAG
GGTTTCTTGCGCATGACTGGCTTTTGCAAAACAAAGATACCAGCTGAGAT
TACTGCTGCCTTGGAGCCTATAAAGGACAATGAAGAAGCTGTTAAAGCCT
ATGGAATTCACCTTGGAGCTGAAATGTGCAAGAAAATTTTAGCTCATGGG
ATTAAGACTGTGCATCTTTATACTCTAAACATGGAGAAATCTGCATTAGC
TATATTATTGGTATCCTTATTGGGATTGTTATGGTGTTGTTTGTGATTAG
TACTTATCACTAAAGCTTGGTGTTCCTAATGATAGACATACATTTGCAGA
ATCTTGGTTTGATT
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