CX295218

Overview
NameCX295218
Unique NameCX295218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_STAA8 (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain NCTC 8325) GN=odhA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 38/123 (30.89%), Postives = 68/123 (55.28%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPN-AEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 442
            + ++IL +GK++ +L E   K+    + +  +E+L PFP + ++  L + PN  EV W QEEP N GA+ Y+ P +   +         D+ Y GR   AA A G  ++H   Q+++++ A++
Sbjct:  813 VTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYPYVKVLV-----ADKYDLSYHGRIQRAAPAEGDGEIHKLVQNKIIENALK 930          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_STAA3 (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain USA300) GN=odhA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 38/123 (30.89%), Postives = 68/123 (55.28%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPN-AEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 442
            + ++IL +GK++ +L E   K+    + +  +E+L PFP + ++  L + PN  EV W QEEP N GA+ Y+ P +   +         D+ Y GR   AA A G  ++H   Q+++++ A++
Sbjct:  813 VTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYPYVKVLV-----ADKYDLSYHGRIQRAAPAEGDGEIHKLVQNKIIENALK 930          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_STAA2 (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain JH1) GN=odhA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 38/123 (30.89%), Postives = 68/123 (55.28%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPN-AEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 442
            + ++IL +GK++ +L E   K+    + +  +E+L PFP + ++  L + PN  EV W QEEP N GA+ Y+ P +   +         D+ Y GR   AA A G  ++H   Q+++++ A++
Sbjct:  813 VTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYPYVKVLV-----ADKYDLSYHGRIQRAAPAEGDGEIHKLVQNKIIENALK 930          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_STAA1 (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=odhA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 38/123 (30.89%), Postives = 68/123 (55.28%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPN-AEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 442
            + ++IL +GK++ +L E   K+    + +  +E+L PFP + ++  L + PN  EV W QEEP N GA+ Y+ P +   +         D+ Y GR   AA A G  ++H   Q+++++ A++
Sbjct:  813 VTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPNLEEVSWVQEEPKNQGAWLYVYPYVKVLV-----ADKYDLSYHGRIQRAAPAEGDGEIHKLVQNKIIENALK 930          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_STAS1 (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=odhA PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 41/121 (33.88%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAE-VVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            ++++IL SGK++ +L E   K+    I +  VE+L PFP D +   L   PN E V W QEEP N GA++++ P L       D+    D+ Y GR   +A A G  ++H   Q+ +++++
Sbjct:  814 VKKVILASGKMFIDLKEYLTKNPNKSILLVAVERLYPFPADEIDALLSELPNLEHVAWVQEEPKNQGAWSFVYPYL--KELTTDK---YDLSYHGRIQRSAPAEGDGEIHKLVQNMIIEQS 929          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_OCEIH (2-oxoglutarate dehydrogenase E1 component OS=Oceanobacillus iheyensis GN=odhA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 42/137 (30.66%), Postives = 74/137 (54.01%), Query Frame = 2
Query:   38 IKDQNEHSDLEEGIRRLILCSGKVYYELYE--ERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            ++DQ       E + RL++ SGK+  ++ E  +    +   + I RVEQ+ PFP   ++ E+K+ PN  E+VW QEEP NMGA+ ++   L   +    +     +K + R   +A A G   VH   Q++++++A+
Sbjct:  810 LRDQPGFEANREKVTRLVVGSGKMMIDIEEAMDDSDETYDWLQIKRVEQIYPFPKKALEEEIKQLPNLKEIVWVQEEPKNMGAWNFVDDYLRELLNEDQK-----LKVISRPDRSAPAGGIPTVHKTAQNKIIKQAL 941          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_STAAU (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus GN=odhA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 37/123 (30.08%), Postives = 67/123 (54.47%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPN-AEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 442
            + ++IL +GK++ +L E   K+    + +  +E+L PFP + ++  L + P   EV W QEEP N GA+ Y+ P +   +         D+ Y GR   AA A G  ++H   Q+++++ A++
Sbjct:  813 VTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPKLEEVSWVQEEPKNQGAWLYVYPYVKVLV-----ADKYDLSYHGRIQRAAPAEGDGEIHKLVQNKIIENALK 930          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_STAAN (2-oxoglutarate dehydrogenase E1 component OS=Staphylococcus aureus (strain N315) GN=odhA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 37/123 (30.08%), Postives = 67/123 (54.47%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPN-AEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 442
            + ++IL +GK++ +L E   K+    + +  +E+L PFP + ++  L + P   EV W QEEP N GA+ Y+ P +   +         D+ Y GR   AA A G  ++H   Q+++++ A++
Sbjct:  791 VTKVILATGKMFIDLKEALAKNPDESVLLVAIERLYPFPEEEIEALLAQLPKLEEVSWVQEEPKNQGAWLYVYPYVKVLV-----ADKYDLSYHGRIQRAAPAEGDGEIHKLVQNKIIENALK 908          
The following BLAST results are available for this feature:
BLAST of CX295218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
ODO1_STAA81.014e-1130.892-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAA31.014e-1130.892-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAA21.014e-1130.892-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAA11.014e-1130.892-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAS11.730e-1133.882-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_OCEIH2.260e-1130.662-oxoglutarate dehydrogenase E1 component OS=Ocean... [more]
ODO1_STAAU5.034e-1130.082-oxoglutarate dehydrogenase E1 component OS=Staph... [more]
ODO1_STAAN5.034e-1130.082-oxoglutarate dehydrogenase E1 component OS=Staph... [more]

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Properties
Property NameValue
Genbank descriptionC05069H08SK PhIFruit1 Citrus clementina cDNA clone C05069H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295218 ID=CX295218; Name=CX295218; organism=Citrus clementina; type=EST; length=708bp
GGGTTTTCACAAACAAGGGACTAGATTTAAACGGCTTATAAAGGATCAGA
ATGAGCACTCTGATCTTGAGGAGGGTATCAGACGTCTGATTCTTTGTTCT
GGAAAAGTCTATTATGAGCTTTATGAAGAGCGAAAGAAGCACAGTGCAAG
TGACATTGCTATTTGTAGGGTGGAACAGCTTTGTCCTTTCCCATATGACC
TTGTCCAGCGGGAGCTTAAACGATATCCAAATGCCGAGGTTGTTTGGAGC
CAGGAAGAGCCAATGAACATGGGTGCGTATACCTACATAGCACCTCGCCT
TTGCACTGCCATGAAAGCAGTGGATAGAGGAACCATGGAGGACATCAAAT
ATGTTGGCCGTGCTCCATCTGCTGCCTCAGCCACCGGCTTCTATCAGGTT
CACGTTAAAGAACAGTCTGAGCTAATGCAGAAAGCCATTCAACCCGAACC
AATTGGTAATCCTTTCTGAAGTCTAATAAACCCTTGAGACCATTATAAGT
AGATTTTTTACTGCACCCAGATAAAACAAGCTGTGCAGTCTGAATTCTTC
TTGAAACCTTTATTCCGCACATTTATTTTGATGTTTGCAATACATTTCTG
CCAATTTGTCCATCGTTTTGTATCCGTAGTCATCATCTCCCCTTCTTCGT
CACGATACAAAACAGTAAATGTACGGGGTCACCGTATATCGTGTCAATTA
TGAAATTT
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