CX295218

Overview
NameCX295218
Unique NameCX295218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_BRUMB (2-oxoglutarate dehydrogenase E1 component OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=sucA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = 2
Query:   41 KDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            KD+      +  IRR++LCSGKVYY+LYEER+K    D+ + RVEQL PFP   +  EL R+ +AE+VW QEEP NMGA+++I P L   +  +D    + ++Y GR  +A+ ATG    H+ + +  ++ A+
Sbjct:  872 KDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRFRHAEMVWCQEEPKNMGAWSFIDPYLEWVLAHID-AKHQRVRYAGRPAAASPATGLMSKHLAQLAAFLEDAL 1003          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_BRUC2 (2-oxoglutarate dehydrogenase E1 component OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=sucA PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.125e-25
Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = 2
Query:   41 KDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            KD+      +  IRR++LCSGKVYY+LYEER+K    D+ + RVEQL PFP   +  EL R+ +AE+VW QEEP NMGA+++I P L   +  +D    + ++Y GR  +A+ ATG    H+ + +  ++ A+
Sbjct:  872 KDEGIKLQKDAKIRRVVLCSGKVYYDLYEEREKRGIDDVYLLRVEQLYPFPAKALINELSRFRHAEMVWCQEEPKNMGAWSFIDPYLEWVLAHID-AKHQRVRYAGRPAAASPATGLMSKHLAQLAAFLEDAL 1003          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_DICDI (2-oxoglutarate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=ogdh PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 53/123 (43.09%), Postives = 76/123 (61.79%), Query Frame = 2
Query:   71 EGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            E I R++ C+G+VYY L   R+ ++  D+AI RVEQL PFP+DLV  +L+ YPNA+ +W QEEPMNMG + YI P   +  K ++R    DI Y GR  SA+ A   + +H  +    +  A+
Sbjct:  886 EKINRIVFCTGQVYYNLIASRESNNIKDVAIIRVEQLHPFPFDLVAEQLQHYPNAKAIWCQEEPMNMGYWNYIYPYFISTFKHINRPA--DITYTGRPSSASPAVASHTLHKLQLENFLSNAL 1006          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: DHTK1_DICDI (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial OS=Dictyostelium discoideum GN=odhA PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.782e-24
Identity = 58/138 (42.03%), Postives = 85/138 (61.59%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELM 427
            GT F+ ++ D +  ++    I+R+I CSGKV+Y+L EERK  + +D+AI R+EQ+ PFPY  +Q E+ RY NA +  W QEE  N G ++++ PR         +     IKY+GR P AASA G   +H KE S+L+
Sbjct:  763 GTHFQTVLSDPDTINNAST-IKRVIFCSGKVFYDLQEERKAKNFNDVAIIRLEQIAPFPYQRIQEEINRYSNATKFAWVQEEQQNGGCWSFVEPRFKQRYPQTSQ-----IKYIGRPPLAASAIGISSIHKKEVSQLL 894          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_COXBU (2-oxoglutarate dehydrogenase E1 component OS=Coxiella burnetii GN=sucA PE=3 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 1.971e-23
Identity = 63/143 (44.06%), Postives = 93/143 (65.03%), Query Frame = 2
Query:   23 RFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSA--SDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 442
            + K LI +  +H   +  I R+ILCSGKVYY+L  +R++H    + IA+ R+EQL PFPYD ++ EL++YPNA +V+W QEEP N GA+     RL   M+  D  T+E   YVGR+  AA A G+  ++VK Q +L+ +A++
Sbjct:  798 QLKLLIPEIEKHDPKK--ITRVILCSGKVYYDLLAKRREHKGKLNHIAMIRIEQLYPFPYDELKAELEKYPNAKQVIWCQEEPKNQGAWFCTRHRLIKCMR--DDQTLE---YVGRSAFAAPAAGYSALYVKLQEQLVNQALE 933          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_RICBR (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia bellii (strain RML369-C) GN=sucA PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            I ++ILCSGKVYY+L+E R  +S+  IAI R+EQL PF   +V   LK+Y  A E +W QEEPMNMGA+ YI   L  A+K  + G   + KY+GR  SA+ A G  Q H K+Q +L+++A+
Sbjct:  807 ITKVILCSGKVYYDLFEMRGSNSS--IAIIRLEQLYPFEKKVVVELLKKYNKASEFIWCQEEPMNMGAWRYITSHLNNALK--EAGINNEFKYIGREESASPAVGSLQAHNKQQEKLLKEAL 924          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_RALEH (2-oxoglutarate dehydrogenase E1 component OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=odhA PE=3 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.488e-23
Identity = 55/130 (42.31%), Postives = 84/130 (64.62%), Query Frame = 2
Query:   53 EHSDLEEG-IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            +H +L    ++R+I+CSGKVYY+L   RK+  A+D A+ R+EQL PFP+  V  ELK+YPNA E+VW Q+EP N GA+ ++   +   M+ +  G  + + Y GR  SA+ A G+Y  H ++Q  L++ A
Sbjct:  815 DHEELNASKVKRVIMCSGKVYYDLVNTRKEREANDTAVIRLEQLYPFPHKAVAAELKKYPNATEIVWCQDEPQNQGAWFFVQHYI---MENMTDG--QKLGYAGRPASASPAVGYYAKHNEQQKALLEAA 939          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_SCHPO (2-oxoglutarate dehydrogenase, mitochondrial OS=Schizosaccharomyces pombe GN=kgd1 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.277e-22
Identity = 56/140 (40.00%), Postives = 87/140 (62.14%), Query Frame = 2
Query:   32 RLIKDQNEHSDL---EEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPN-AEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            +LI ++ EH       E I +LI+CSG+V+  L + R+++   +IAI RVEQL PF +  +   + +YPN  E++W QEEP+N GA+TY+ PR+ T +K + R     ++Y GR PSA+ A G  Q H+ EQ + +  A+
Sbjct:  871 KLILEEEEHGKSILPPEKIEKLIICSGQVWVALSKAREENKIDNIAITRVEQLHPFGWKQMAANISQYPNLKEIIWCQEEPLNAGAWTYMEPRIYTILKHLGRDL--PVRYAGRPPSASVAAGNKQQHLAEQEQFLNDAL 1008          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_RICCN (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia conorii GN=sucA PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 59/122 (48.36%), Postives = 78/122 (63.93%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            I ++ILCSGKVYY+L+E R  +S  +IAI R+EQL PF   LV   LK+Y    E +W QEEP NMG + YI   L  A+K  + G   + KYVGR  SA+ A G  QVH K+Q +L++ A+
Sbjct:  809 ITKVILCSGKVYYDLFEMRGNNS--NIAIIRLEQLYPFEKKLVASLLKKYNRTQEFIWCQEEPKNMGTWCYIVSHLNDALK--EAGIKNEFKYVGREESASPAVGSLQVHNKQQEKLLRTAL 926          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_RICTY (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia typhi GN=sucA PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.081e-21
Identity = 58/125 (46.40%), Postives = 80/125 (64.00%), Query Frame = 2
Query:   68 EEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEV-VWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            +  I ++ILCSGKVYY+L+ +R  +S  +I I R+EQL PF   LV   LK+Y  A+  +W QEEP NMGA+ YIA  L  A+K  +     + KYVGR  SA+ A G  QVH K+Q +L+ +A+
Sbjct:  807 KNNITKVILCSGKVYYDLFAKRVHNS--NIVIIRLEQLYPFEKTLVASLLKKYNKAQAFIWCQEEPKNMGAWNYIAEHLNDALKEAE--INNEFKYVGREESASPAVGSLQVHNKQQEKLLMEAL 927          
The following BLAST results are available for this feature:
BLAST of CX295218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
ODO1_BRUMB6.125e-2542.112-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_BRUC26.125e-2542.112-oxoglutarate dehydrogenase E1 component OS=Bruce... [more]
ODO1_DICDI1.365e-2443.092-oxoglutarate dehydrogenase, mitochondrial OS=Dic... [more]
DHTK1_DICDI1.782e-2442.03Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_COXBU1.971e-2344.062-oxoglutarate dehydrogenase E1 component OS=Coxie... [more]
ODO1_RICBR7.488e-2348.362-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
ODO1_RALEH7.488e-2342.312-oxoglutarate dehydrogenase E1 component OS=Ralst... [more]
ODO1_SCHPO1.277e-2240.002-oxoglutarate dehydrogenase, mitochondrial OS=Sch... [more]
ODO1_RICCN6.339e-2248.362-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
ODO1_RICTY1.081e-2146.402-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]

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Properties
Property NameValue
Genbank descriptionC05069H08SK PhIFruit1 Citrus clementina cDNA clone C05069H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295218 ID=CX295218; Name=CX295218; organism=Citrus clementina; type=EST; length=708bp
GGGTTTTCACAAACAAGGGACTAGATTTAAACGGCTTATAAAGGATCAGA
ATGAGCACTCTGATCTTGAGGAGGGTATCAGACGTCTGATTCTTTGTTCT
GGAAAAGTCTATTATGAGCTTTATGAAGAGCGAAAGAAGCACAGTGCAAG
TGACATTGCTATTTGTAGGGTGGAACAGCTTTGTCCTTTCCCATATGACC
TTGTCCAGCGGGAGCTTAAACGATATCCAAATGCCGAGGTTGTTTGGAGC
CAGGAAGAGCCAATGAACATGGGTGCGTATACCTACATAGCACCTCGCCT
TTGCACTGCCATGAAAGCAGTGGATAGAGGAACCATGGAGGACATCAAAT
ATGTTGGCCGTGCTCCATCTGCTGCCTCAGCCACCGGCTTCTATCAGGTT
CACGTTAAAGAACAGTCTGAGCTAATGCAGAAAGCCATTCAACCCGAACC
AATTGGTAATCCTTTCTGAAGTCTAATAAACCCTTGAGACCATTATAAGT
AGATTTTTTACTGCACCCAGATAAAACAAGCTGTGCAGTCTGAATTCTTC
TTGAAACCTTTATTCCGCACATTTATTTTGATGTTTGCAATACATTTCTG
CCAATTTGTCCATCGTTTTGTATCCGTAGTCATCATCTCCCCTTCTTCGT
CACGATACAAAACAGTAAATGTACGGGGTCACCGTATATCGTGTCAATTA
TGAAATTT
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