CX295218

Overview
NameCX295218
Unique NameCX295218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_RICFE (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia felis GN=sucA PE=3 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.412e-21
Identity = 58/122 (47.54%), Postives = 78/122 (63.93%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            I ++ILCSGKVYY+L+E R  +S  +IAI R+EQL PF   LV   LK+Y    E +W QEEP NMGA+ YI   L   +K  + G   + KYVGR  SA+ A G  Q H K+Q +L+++A+
Sbjct:  858 ITKVILCSGKVYYDLFEMRGNNS--NIAIIRLEQLYPFEKKLVASLLKKYNRTQEFIWCQEEPKNMGAWRYIVSHLNDVLK--EAGINNEFKYVGREESASPAVGSLQAHNKQQEKLLKEAL 975          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_RICPR (2-oxoglutarate dehydrogenase E1 component OS=Rickettsia prowazekii GN=sucA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.109e-21
Identity = 57/122 (46.72%), Postives = 78/122 (63.93%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEV-VWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            + ++ILCSGKVYY+L+  R  +S  +I I R+EQL PF   LV   LK+Y  A+  +W QEEP NMGA+ YIA  L  A+K  +     + KYVGR  SA+ A G  QVH K+Q +L+ +A+
Sbjct:  809 VTKVILCSGKVYYDLFAMRTNNS--NIVIIRLEQLYPFEKKLVASLLKKYNKAQAFIWCQEEPKNMGAWHYIATHLNDALKEAEINN--EFKYVGREESASPAVGSLQVHNKQQEKLLMEAL 926          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: DHTK1_DROME (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial OS=Drosophila melanogaster GN=CG1544 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 53/120 (44.17%), Postives = 73/120 (60.83%), Query Frame = 2
Query:   71 EGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAE-VVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELM 427
            E +R++ILCSGK YY L EER+K  A D AI R+E LCPFP   +Q +L +Y N +  VWSQEE  NMGA+T++ PR        +    + + Y GR  +   ATG  +VH +E  E++
Sbjct:  801 EQVRKVILCSGKHYYTLAEEREKRQAYDTAILRLESLCPFPIQELQAQLAQYGNVQSFVWSQEEHRNMGAWTFVRPRF-------ENLIGQQLHYCGRCEAPTPATGIGKVHKREVDEIV 913          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_ECOLI (2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli (strain K12) GN=sucA PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 50/127 (39.37%), Postives = 83/127 (65.35%), Query Frame = 2
Query:   71 EGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQPE 448
            +G++R+++CSGKVYY+L E+R+K++  D+AI R+EQL PFP+  +Q  L+++ +  + VW QEEP+N GA+ Y +       + +  G    ++Y GR  SA+ A G+  VH K+Q +L+  A+  E
Sbjct:  812 KGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAW-YCSQH--HFREVIPFGA--SLRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVE 933          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_ECOL6 (2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O6 GN=sucA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 50/127 (39.37%), Postives = 83/127 (65.35%), Query Frame = 2
Query:   71 EGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQPE 448
            +G++R+++CSGKVYY+L E+R+K++  D+AI R+EQL PFP+  +Q  L+++ +  + VW QEEP+N GA+ Y +       + +  G    ++Y GR  SA+ A G+  VH K+Q +L+  A+  E
Sbjct:  812 KGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAW-YCSQH--HFREVIPFGA--SLRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVE 933          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_ECO57 (2-oxoglutarate dehydrogenase E1 component OS=Escherichia coli O157:H7 GN=sucA PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.153e-21
Identity = 50/127 (39.37%), Postives = 83/127 (65.35%), Query Frame = 2
Query:   71 EGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQPE 448
            +G++R+++CSGKVYY+L E+R+K++  D+AI R+EQL PFP+  +Q  L+++ +  + VW QEEP+N GA+ Y +       + +  G    ++Y GR  SA+ A G+  VH K+Q +L+  A+  E
Sbjct:  812 KGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAW-YCSQH--HFREVIPFGA--SLRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVE 933          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_YEAST (2-oxoglutarate dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=KGD1 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.561e-20
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = 2
Query:   26 FKRLIKDQNEHSDL--EEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAE-VVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 442
            F+ +I+D      +  +E  +RL+L SG+VY  L++ R+       A  ++EQL PFP+  ++  L  YPN E +VW QEEP+NMG++ Y  PRL T +K  D+     ++Y GR PS A A G   +H+ E+   ++   Q
Sbjct:  871 FQWIIEDIEHGKSIGTKEETKRLVLLSGQVYTALHKRRESLGDKTTAFLKIEQLHPFPFAQLRDSLNSYPNLEEIVWCQEEPLNMGSWAYTEPRLHTTLKETDKYKDFKVRYCGRNPSGAVAAGSKSLHLAEEDAFLKDVFQ 1012          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_HAEIN (2-oxoglutarate dehydrogenase E1 component OS=Haemophilus influenzae GN=sucA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 47/122 (38.52%), Postives = 80/122 (65.57%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPN-AEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            ++R+++CSGKVYY+L E+R+ ++  D+AI R+EQL PFP++ V++ L+ Y +  + VW QEEP+N GA+        +A+    +     +KY GR  SA+ A G+  +H K+Q +L++ A+
Sbjct:  817 VKRVVMCSGKVYYDLLEQRRANNQKDVAIIRIEQLYPFPHEDVKKALEPYAHVTDYVWCQEEPLNQGAWYCSKHNFESAIPESVK-----LKYAGRPASASPAVGYMSLHTKQQKQLVEDAL 933          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: DHTK1_XENLA (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Xenopus laevis GN=dhtkd1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 53/144 (36.81%), Postives = 83/144 (57.64%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKK--HSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            G  F+ +I D +      + + ++ILCSGK YY L+++R+         AI RVE+LCPFP + +Q+E+ RYP A + +WSQEEP NMGA+T++APR        ++     ++ V R    A A G   +H ++Q E+  K +
Sbjct:  793 GKTFRSVIGDSSADP---KSVSKVILCSGKHYYALHKQREALGEQGRSSAIIRVEELCPFPLEALQQEIHRYPKAKDFIWSQEEPQNMGAWTFVAPRF-------EKQLACKLRLVSRPALPAPAVGIGTLHQQQQEEITVKTL 926          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: DHTK1_MOUSE (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Mus musculus GN=Dhtkd1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.846e-19
Identity = 53/145 (36.55%), Postives = 84/145 (57.93%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEER-----KKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQK 433
            GT FK +I D +      + ++ LI CSGK +Y L ++R     KKH   D AI R+E+LCPFP D +Q+E+ +Y +  +V+WSQEEP NMG +++++PR        ++     ++ V R P  A A G   VH ++  +++ K
Sbjct:  786 GTAFKPVIGDSSVDP---KNVKTLIFCSGKHFYALLKQRESLGTKKH---DFAIIRLEELCPFPLDALQQEMSKYKHVRDVIWSQEEPQNMGPWSFVSPRF-------EKQLACRLRLVSRPPLPAPAVGIGTVHQQQHEDILSK 917          
The following BLAST results are available for this feature:
BLAST of CX295218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
ODO1_RICFE1.412e-2147.542-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
ODO1_RICPR4.109e-2146.722-oxoglutarate dehydrogenase E1 component OS=Ricke... [more]
DHTK1_DROME7.008e-2144.17Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_ECOLI9.153e-2139.372-oxoglutarate dehydrogenase E1 component OS=Esche... [more]
ODO1_ECOL69.153e-2139.372-oxoglutarate dehydrogenase E1 component OS=Esche... [more]
ODO1_ECO579.153e-2139.372-oxoglutarate dehydrogenase E1 component OS=Esche... [more]
ODO1_YEAST1.561e-2036.622-oxoglutarate dehydrogenase, mitochondrial OS=Sac... [more]
ODO1_HAEIN3.478e-2038.522-oxoglutarate dehydrogenase E1 component OS=Haemo... [more]
DHTK1_XENLA1.012e-1936.81Probable 2-oxoglutarate dehydrogenase E1 component... [more]
DHTK1_MOUSE3.846e-1936.55Probable 2-oxoglutarate dehydrogenase E1 component... [more]

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Properties
Property NameValue
Genbank descriptionC05069H08SK PhIFruit1 Citrus clementina cDNA clone C05069H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295218 ID=CX295218; Name=CX295218; organism=Citrus clementina; type=EST; length=708bp
GGGTTTTCACAAACAAGGGACTAGATTTAAACGGCTTATAAAGGATCAGA
ATGAGCACTCTGATCTTGAGGAGGGTATCAGACGTCTGATTCTTTGTTCT
GGAAAAGTCTATTATGAGCTTTATGAAGAGCGAAAGAAGCACAGTGCAAG
TGACATTGCTATTTGTAGGGTGGAACAGCTTTGTCCTTTCCCATATGACC
TTGTCCAGCGGGAGCTTAAACGATATCCAAATGCCGAGGTTGTTTGGAGC
CAGGAAGAGCCAATGAACATGGGTGCGTATACCTACATAGCACCTCGCCT
TTGCACTGCCATGAAAGCAGTGGATAGAGGAACCATGGAGGACATCAAAT
ATGTTGGCCGTGCTCCATCTGCTGCCTCAGCCACCGGCTTCTATCAGGTT
CACGTTAAAGAACAGTCTGAGCTAATGCAGAAAGCCATTCAACCCGAACC
AATTGGTAATCCTTTCTGAAGTCTAATAAACCCTTGAGACCATTATAAGT
AGATTTTTTACTGCACCCAGATAAAACAAGCTGTGCAGTCTGAATTCTTC
TTGAAACCTTTATTCCGCACATTTATTTTGATGTTTGCAATACATTTCTG
CCAATTTGTCCATCGTTTTGTATCCGTAGTCATCATCTCCCCTTCTTCGT
CACGATACAAAACAGTAAATGTACGGGGTCACCGTATATCGTGTCAATTA
TGAAATTT
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