CX295218

Overview
NameCX295218
Unique NameCX295218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_AZOVI (2-oxoglutarate dehydrogenase E1 component OS=Azotobacter vinelandii GN=sucA PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.119e-18
Identity = 50/121 (41.32%), Postives = 74/121 (61.16%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAE-VVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            + RL+LCSGKVYY+L ++R      DIAI R+EQL PFP + +   +  Y N + VVW QEEPMN GA+ Y +      + +  +  +  ++Y GR  SAA A G+  +H ++Q +L+Q A
Sbjct:  822 VERLVLCSGKVYYDLLDKRHAEGREDIAIVRIEQLYPFPEEELAEVMAPYTNLKHVVWCQEEPMNQGAW-YCSQHHMRRVASAHKKEL-FLQYAGREASAAPACGYASMHAEQQEKLLQDA 940          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: DHTK1_HUMAN (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Homo sapiens GN=DHTKD1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 49/142 (34.51%), Postives = 81/142 (57.04%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSAS--DIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQK 433
            GT F  +I D +      + ++ L+ CSGK +Y L ++R+   A   D AI RVE+LCPFP D +Q+E+ +Y +  + +WSQEEP NMG +++++PR        ++     ++ VGR P    A G   VH+ +  +++ K
Sbjct:  785 GTTFNPVIGDSSVDP---KKVKTLVFCSGKHFYSLVKQRESLGAKKHDFAIIRVEELCPFPLDSLQQEMSKYKHVKDHIWSQEEPQNMGPWSFVSPRF-------EKQLACKLRLVGRPPLPVPAVGIGTVHLHQHEDILAK 916          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_EXISA (2-oxoglutarate dehydrogenase E1 component OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=odhA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 50/133 (37.59%), Postives = 82/133 (61.65%), Query Frame = 2
Query:   71 EGIRRLILCSGKVYYELYEE--RKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQPEPIGN 460
            E + RL+ C+GK+  +L E   + + S   + I RVE++ PFP   ++  + RYPNA E+VW QEEP NMGA+TYI PRL    +AV    + D++Y+GR   ++ A G    H +EQ+ ++++A+  + + +
Sbjct:  812 EKVERLVFCTGKMAIDLAEAVGKSEESLDFLHIVRVEEIYPFPVREIRDVISRYPNAREIVWVQEEPKNMGAWTYIEPRL----EAVTTNRL-DVRYIGRRRRSSPAEGNPTAHKQEQARIIREALSRDVVSS 939          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_BUCAP (2-oxoglutarate dehydrogenase E1 component OS=Buchnera aphidicola subsp. Schizaphis graminum GN=sucA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 52/138 (37.68%), Postives = 76/138 (55.07%), Query Frame = 2
Query:   26 FKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            FK +I   NE    ++ ++R+I CSGK+YY+L E R K   +++ + R+EQL PFP D +   LK Y    + +W QEEP N GA+ YI   L T +          + YV R  +A+ A G   +H KEQ +L+  A
Sbjct:  788 FKNVI---NEIDKNQKEVKRIIFCSGKIYYDLLEYRNKCDINNVLLIRIEQLYPFPKDEILTILKSYSYVQDFIWCQEEPHNQGAWFYIKDLLSTLLP-----LNSHLNYVSRPSAASPAAGHILIHRKEQEKLINNA 917          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: DHTK1_PONAB (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Pongo abelii GN=DHTKD1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 49/142 (34.51%), Postives = 80/142 (56.34%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSAS--DIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQK 433
            GT F  +I D +      + ++ L+ CSGK +Y L ++R+   A   D AI RVE+LCPFP D +Q+E+ +Y +  + +WSQEEP NMG + +++PR        ++     ++ VGR P    A G   VH+ +  +++ K
Sbjct:  785 GTTFNPVIGDSSVDP---KKVKTLVFCSGKHFYSLMKQRESLGAKKHDFAIIRVEELCPFPLDSLQQEMSKYKHVKDHIWSQEEPQNMGPWLFVSPRF-------EKQLACKLRLVGRPPLPVPAVGIGTVHLHQHEDILAK 916          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: DHTK1_RAT (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Rattus norvegicus GN=Dhtkd1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.253e-18
Identity = 50/142 (35.21%), Postives = 81/142 (57.04%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSAS--DIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQK 433
            GT FK +I D +      + ++ LI CSGK +Y L ++R+   A   D AI R+E+LCPFP D +Q+E+ +Y +  +++WSQEEP NMG ++++ PR        ++     ++ V R P  A A G   VH ++   ++ K
Sbjct:  785 GTAFKPVIGDSSVDP---KNVKTLIFCSGKHFYALLKQRESLGAKKRDFAIIRLEELCPFPLDSLQQEMGKYKHVQDIIWSQEEPQNMGPWSFVYPRF-------EKQLACKLRLVSRPPLPAPAVGIGTVHQQQHEAILFK 916          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_GEOSW (2-oxoglutarate dehydrogenase E1 component OS=Geobacillus sp. (strain WCH70) GN=odhA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 53/134 (39.55%), Postives = 77/134 (57.46%), Query Frame = 2
Query:   44 DQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASD-IAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            +Q    +  E + R+ILC+GK   +L E+  K    D + I RVE+L PFP + +Q    RYPN  E++W+QEEP NMG++ Y+ P+L     A D     D+ Y+GR   A+ A G   VH KEQ  ++Q A+
Sbjct:  819 EQKGLGENREKVERIILCTGKFAIDLAEQINKMEGLDWLHIVRVEELYPFPKEELQAIFARYPNVKEIIWAQEEPKNMGSWCYVEPKLREI--APDE---VDVSYIGRRRRASPAEGDPVVHRKEQERIIQCAL 947          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_BUCAI (2-oxoglutarate dehydrogenase E1 component OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=sucA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 45/120 (37.50%), Postives = 69/120 (57.50%), Query Frame = 2
Query:   83 RLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRY-PNAEVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            RLI CSGK+YY+L   R++   + I + R+EQL PFP   + + LK Y    + +W QEEP N GA+ YI   L   +          +KY+GR+ SA+ A G+  +H K+Q +++  A+
Sbjct:  792 RLIFCSGKIYYDLLRNRREKKINSIILIRIEQLYPFPEGEILKILKNYFYIKDFIWCQEEPYNQGAWFYIKDCLSNILP-----LDASLKYIGRSSSASPAVGYISIHKKQQEKIIYNAL 906          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: DHTK1_DANRE (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1, mitochondrial OS=Danio rerio GN=dhtkd1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 48/140 (34.29%), Postives = 80/140 (57.14%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKK--HSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELM 427
            GT FK +I D + +      ++R++ CSGK YY L + R+    +  + A+ RVE+LCPFP + +Q+EL +Y NA E +WSQEEP NMG +++++PR        ++     ++ V R    A A G   +H ++   ++
Sbjct:  786 GTSFKPIIGDSSVNP---ASVQRVLFCSGKHYYALLKHRETIPEAEKNTALVRVEELCPFPTEALQQELNKYTNAKEFIWSQEEPQNMGCWSFVSPRF-------EKQLACKLRLVSRPALPAPAVGIGTLHHQQHEAIL 915          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_BACHD (2-oxoglutarate dehydrogenase E1 component OS=Bacillus halodurans GN=odhA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 50/143 (34.97%), Postives = 83/143 (58.04%), Query Frame = 2
Query:   23 RFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASD---IAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            RFK +++  N   +  E + R++LCSGK+  +L +  +K +  D   + I RVEQL PFP + +Q    RYPN  E+VWSQEEP NMGA+ ++  ++    +A   G   +++Y GR   ++ A G   +H +EQ  ++ + +
Sbjct:  807 RFKTVLEQPNL-GESHEKVERIVLCSGKIAIDLQDRIEKEADKDWDWVHIVRVEQLYPFPKEPLQEIFARYPNVKEIVWSQEEPRNMGAWPFVQSKI---RRAAPNGI--NVRYEGRTYRSSPAEGDPIIHKQEQERIVTETL 943          
The following BLAST results are available for this feature:
BLAST of CX295218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
ODO1_AZOVI1.119e-1841.322-oxoglutarate dehydrogenase E1 component OS=Azoto... [more]
DHTK1_HUMAN3.256e-1834.51Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_EXISA4.252e-1837.592-oxoglutarate dehydrogenase E1 component OS=Exigu... [more]
ODO1_BUCAP4.252e-1837.682-oxoglutarate dehydrogenase E1 component OS=Buchn... [more]
DHTK1_PONAB5.553e-1834.51Probable 2-oxoglutarate dehydrogenase E1 component... [more]
DHTK1_RAT7.253e-1835.21Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_GEOSW2.756e-1739.552-oxoglutarate dehydrogenase E1 component OS=Geoba... [more]
ODO1_BUCAI3.599e-1737.502-oxoglutarate dehydrogenase E1 component OS=Buchn... [more]
DHTK1_DANRE3.599e-1734.29Probable 2-oxoglutarate dehydrogenase E1 component... [more]
ODO1_BACHD8.019e-1734.972-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]

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Properties
Property NameValue
Genbank descriptionC05069H08SK PhIFruit1 Citrus clementina cDNA clone C05069H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295218 ID=CX295218; Name=CX295218; organism=Citrus clementina; type=EST; length=708bp
GGGTTTTCACAAACAAGGGACTAGATTTAAACGGCTTATAAAGGATCAGA
ATGAGCACTCTGATCTTGAGGAGGGTATCAGACGTCTGATTCTTTGTTCT
GGAAAAGTCTATTATGAGCTTTATGAAGAGCGAAAGAAGCACAGTGCAAG
TGACATTGCTATTTGTAGGGTGGAACAGCTTTGTCCTTTCCCATATGACC
TTGTCCAGCGGGAGCTTAAACGATATCCAAATGCCGAGGTTGTTTGGAGC
CAGGAAGAGCCAATGAACATGGGTGCGTATACCTACATAGCACCTCGCCT
TTGCACTGCCATGAAAGCAGTGGATAGAGGAACCATGGAGGACATCAAAT
ATGTTGGCCGTGCTCCATCTGCTGCCTCAGCCACCGGCTTCTATCAGGTT
CACGTTAAAGAACAGTCTGAGCTAATGCAGAAAGCCATTCAACCCGAACC
AATTGGTAATCCTTTCTGAAGTCTAATAAACCCTTGAGACCATTATAAGT
AGATTTTTTACTGCACCCAGATAAAACAAGCTGTGCAGTCTGAATTCTTC
TTGAAACCTTTATTCCGCACATTTATTTTGATGTTTGCAATACATTTCTG
CCAATTTGTCCATCGTTTTGTATCCGTAGTCATCATCTCCCCTTCTTCGT
CACGATACAAAACAGTAAATGTACGGGGTCACCGTATATCGTGTCAATTA
TGAAATTT
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