CX295218

Overview
NameCX295218
Unique NameCX295218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: DHTK1_CAEEL (Probable 2-oxoglutarate dehydrogenase E1 component DHKTD1 homolog, mitochondrial OS=Caenorhabditis elegans GN=ZK836.2 PE=2 SV=4)

HSP 1 Score: 87.4261 bits (215), Expect = 8.019e-17
Identity = 51/141 (36.17%), Postives = 80/141 (56.74%), Query Frame = 2
Query:   17 GTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASD-IAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQK 433
            GT ++ +I +  EH+   + I+++I  SGK +  + + R +    D +AI RVE LCPFP   +Q  LK+YP A + VWSQEEP N GA++++ PR   A+          +K+ GR   A +AT   + H KE  E++ +
Sbjct:  777 GTTYQNVISE--EHATSSQKIKKVIFVSGKHWINVEKARDERGLKDSVAIVRVEMLCPFPVVDLQAVLKKYPGAQDFVWSQEEPRNAGAWSFVRPRFENALGV-------RLKFAGRPELAWTATAIGEHHTKEAEEVINQ 908          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: KGD_MYCUA (2-oxoglutarate decarboxylase OS=Mycobacterium ulcerans (strain Agy99) GN=kgd PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.786e-16
Identity = 46/121 (38.02%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            + R++L SGK+YYE+   + K    D+AI RVEQL P P   ++  L RYPNA E  W QEEP N GA+    PR    +  +    +  +K + R   +A ++G  +VH  EQ E++  A
Sbjct: 1120 VNRILLTSGKIYYEMVARKAKDKREDVAIVRVEQLAPLPRRRLRETLDRYPNAKEFFWVQEEPANQGAW----PRFGLELPELLPEKLSGVKRISRRAMSAPSSGSSKVHAVEQQEILDTA 1236          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_BUCBP (Oxoglutarate dehydrogenase OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=sucA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 45/137 (32.85%), Postives = 81/137 (59.12%), Query Frame = 2
Query:   32 RLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            R + D+ ++ D ++ ++R+ILCSGK+YY+L  +R+ +   +I I R+EQ+ P P   +   L  Y +  + +W QEEP N GA+ Y    L   +    +     + YVGR+ SA+ ATG+ ++H ++Q +++  A+
Sbjct:  782 RTVIDEIDNLDTKK-VQRIILCSGKIYYDLLTQRRINQQKNIVILRIEQIYPRPTKKLSAILYNYKDVHDYIWCQEEPCNQGAWLYHKSYLKKLLPKHSK-----LNYVGRSSSASPATGYMKIHKEQQKKIIYDAL 912          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_LEPIN (2-oxoglutarate dehydrogenase E1 component OS=Leptospira interrogans GN=sucA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 2
Query:   14 QGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 442
            QG   + LI D     D    I +++  +GKVYY+L + + ++   ++A+ RVEQ+ PFP   +Q  LK + NA + VW QEEP N GA+ ++  R+   +    R     + Y GR  S + A G  ++H++EQ +L+  A Q
Sbjct:  784 QGAFREILIDDSGSKPDK---IEKVVFSAGKVYYDLMKYKDENKIKNVALVRVEQIYPFPAKEIQSSLKTFKNAKQFVWCQEEPKNQGAWFFVRERIEELLPGNAR-----LVYAGRHESPSPAAGHMKLHLQEQDQLVLDAFQ 919          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_LEPIC (2-oxoglutarate dehydrogenase E1 component OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=sucA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 49/144 (34.03%), Postives = 79/144 (54.86%), Query Frame = 2
Query:   14 QGTRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 442
            QG   + LI D     D    I +++  +GKVYY+L + + ++   ++A+ RVEQ+ PFP   +Q  LK + NA + VW QEEP N GA+ ++  R+   +    R     + Y GR  S + A G  ++H++EQ +L+  A Q
Sbjct:  784 QGAFREILIDDSGSKPDK---IEKVVFSAGKVYYDLMKYKDENKIKNVALVRVEQIYPFPAKEIQSSLKTFKNAKQFVWCQEEPKNQGAWFFVRERIEELLPGNAR-----LVYAGRHESPSPAAGHMKLHLQEQDQLVLDAFQ 919          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: KGD_MYCSS (2-oxoglutarate decarboxylase OS=Mycobacterium sp. (strain MCS) GN=kgd PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQP 445
            + R++L SGK+YYEL   + K S  D+AI R+EQL P P   +   L +YPN  E  W QEEP N GA+    P     +  +       IK + R   +A ++G  +VH  EQ E++ +A  P
Sbjct: 1150 VTRILLTSGKIYYELVARKNKESRDDVAIVRIEQLAPLPKRRLAETLDKYPNVEEKFWVQEEPANQGAW----PTFGLTLPEMLPDHFTGIKRISRRAMSAPSSGSSKVHAVEQQEILDEAFAP 1269          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: KGD_MYCSK (2-oxoglutarate decarboxylase OS=Mycobacterium sp. (strain KMS) GN=kgd PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQP 445
            + R++L SGK+YYEL   + K S  D+AI R+EQL P P   +   L +YPN  E  W QEEP N GA+    P     +  +       IK + R   +A ++G  +VH  EQ E++ +A  P
Sbjct: 1150 VTRILLTSGKIYYELVARKNKESRDDVAIVRIEQLAPLPKRRLAETLDKYPNVEEKFWVQEEPANQGAW----PTFGLTLPEMLPDHFTGIKRISRRAMSAPSSGSSKVHAVEQQEILDEAFAP 1269          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: KGD_MYCSJ (2-oxoglutarate decarboxylase OS=Mycobacterium sp. (strain JLS) GN=kgd PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.980e-16
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQP 445
            + R++L SGK+YYEL   + K S  D+AI R+EQL P P   +   L +YPN  E  W QEEP N GA+    P     +  +       IK + R   +A ++G  +VH  EQ E++ +A  P
Sbjct: 1145 VTRILLTSGKIYYELVARKNKESRDDVAIVRIEQLAPLPKRRLAETLDKYPNVDEKFWVQEEPANQGAW----PTFGLTLPEMLPDHFTGIKRISRRAMSAPSSGSSKVHAVEQQEILDEAFAP 1264          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_CORGL (2-oxoglutarate dehydrogenase E1 component OS=Corynebacterium glutamicum GN=odhA PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 47/142 (33.10%), Postives = 81/142 (57.04%), Query Frame = 2
Query:   20 TRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAIQ 442
            T+F+ +I D N     +  +++++L SGK+YYEL + ++K    DIAI R+E L P P++ +   L  YPNA EV++ Q+EP N G + +    L   +       M  ++ V R   +++ATG  +VH  E+ +L+ +A +
Sbjct: 1122 TKFQSVINDPNVADAAK--VKKVMLVSGKLYYELAKRKEKDGRDDIAIVRIEMLHPIPFNRISEALAGYPNAEEVLFVQDEPANQGPWPFYQEHLPELIP-----NMPKMRRVSRRAQSSTATGVAKVHQLEEKQLIDEAFE 1256          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: KGD_MYCVP (2-oxoglutarate decarboxylase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=kgd PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.512e-15
Identity = 47/120 (39.17%), Postives = 66/120 (55.00%), Query Frame = 2
Query:   80 RRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAE-VVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            +R++L SGK+YYEL   + K    D+AI R+EQL P P   +   L  YPNAE   W QEEP N GA+    P L   +  V    +  IK + R   +A ++G  +VH  EQ E++ +A
Sbjct: 1126 KRILLTSGKLYYELAARKSKEGRDDVAILRLEQLAPLPKRRLAATLDEYPNAEQYFWVQEEPANQGAW----PTLGLTLPEVLPEKLAGIKRISRRAMSAPSSGSSKVHAVEQQEIIDEA 1241          
The following BLAST results are available for this feature:
BLAST of CX295218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
DHTK1_CAEEL8.019e-1736.17Probable 2-oxoglutarate dehydrogenase E1 component... [more]
KGD_MYCUA1.786e-1638.022-oxoglutarate decarboxylase OS=Mycobacterium ulce... [more]
ODO1_BUCBP3.047e-1632.85Oxoglutarate dehydrogenase OS=Buchnera aphidicola ... [more]
ODO1_LEPIN3.980e-1634.032-oxoglutarate dehydrogenase E1 component OS=Lepto... [more]
ODO1_LEPIC3.980e-1634.032-oxoglutarate dehydrogenase E1 component OS=Lepto... [more]
KGD_MYCSS3.980e-1637.102-oxoglutarate decarboxylase OS=Mycobacterium sp. ... [more]
KGD_MYCSK3.980e-1637.102-oxoglutarate decarboxylase OS=Mycobacterium sp. ... [more]
KGD_MYCSJ3.980e-1637.102-oxoglutarate decarboxylase OS=Mycobacterium sp. ... [more]
ODO1_CORGL8.866e-1633.102-oxoglutarate dehydrogenase E1 component OS=Coryn... [more]
KGD_MYCVP1.512e-1539.172-oxoglutarate decarboxylase OS=Mycobacterium vanb... [more]

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Properties
Property NameValue
Genbank descriptionC05069H08SK PhIFruit1 Citrus clementina cDNA clone C05069H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295218 ID=CX295218; Name=CX295218; organism=Citrus clementina; type=EST; length=708bp
GGGTTTTCACAAACAAGGGACTAGATTTAAACGGCTTATAAAGGATCAGA
ATGAGCACTCTGATCTTGAGGAGGGTATCAGACGTCTGATTCTTTGTTCT
GGAAAAGTCTATTATGAGCTTTATGAAGAGCGAAAGAAGCACAGTGCAAG
TGACATTGCTATTTGTAGGGTGGAACAGCTTTGTCCTTTCCCATATGACC
TTGTCCAGCGGGAGCTTAAACGATATCCAAATGCCGAGGTTGTTTGGAGC
CAGGAAGAGCCAATGAACATGGGTGCGTATACCTACATAGCACCTCGCCT
TTGCACTGCCATGAAAGCAGTGGATAGAGGAACCATGGAGGACATCAAAT
ATGTTGGCCGTGCTCCATCTGCTGCCTCAGCCACCGGCTTCTATCAGGTT
CACGTTAAAGAACAGTCTGAGCTAATGCAGAAAGCCATTCAACCCGAACC
AATTGGTAATCCTTTCTGAAGTCTAATAAACCCTTGAGACCATTATAAGT
AGATTTTTTACTGCACCCAGATAAAACAAGCTGTGCAGTCTGAATTCTTC
TTGAAACCTTTATTCCGCACATTTATTTTGATGTTTGCAATACATTTCTG
CCAATTTGTCCATCGTTTTGTATCCGTAGTCATCATCTCCCCTTCTTCGT
CACGATACAAAACAGTAAATGTACGGGGTCACCGTATATCGTGTCAATTA
TGAAATTT
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