CX295218

Overview
NameCX295218
Unique NameCX295218
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: KGD_MYCPA (2-oxoglutarate decarboxylase OS=Mycobacterium paratuberculosis GN=kgd PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 45/121 (37.19%), Postives = 66/121 (54.55%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            + R++L SGK+YYEL   + K +  D+AI R+EQL P P   +   L RYPN  E  W QEEP N GA+    PR    +  +    +  +K + R   +A ++G  +VH  EQ E++  A
Sbjct: 1129 VSRVLLTSGKLYYELVARKNKDNRDDVAIVRIEQLAPLPKRRLGETLDRYPNVREYFWVQEEPANQGAW----PRFGLELPELLPDKLTGLKRISRRAMSAPSSGSSKVHAVEQQEIIDTA 1245          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: KGD_MYCS2 (2-oxoglutarate decarboxylase OS=Mycobacterium smegmatis GN=kgd PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 45/121 (37.19%), Postives = 64/121 (52.89%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            + RL+L SGK+YYEL   + K +  D+AI R+EQL P P   +   L RYPN  E  W QEEP N GA+    P     +  +       +K + R   +A ++G  +VH  EQ E++  A
Sbjct: 1109 VTRLLLTSGKIYYELAARKAKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFWVQEEPANQGAW----PSFGLTLPEILPDHFTGLKRISRRAMSAPSSGSSKVHAVEQQEILDTA 1225          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_GEOKA (2-oxoglutarate dehydrogenase E1 component OS=Geobacillus kaustophilus GN=odhA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.400e-15
Identity = 49/124 (39.52%), Postives = 74/124 (59.68%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASD-IAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRL-CTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            + R++  +GK+  +L E+  K  + D + I R+E+L PFP + V+  + RYPN  E+VW QEEP NMGA+ Y+ PRL   A + V      D+ Y+GR   A+ A G   VH KEQ  +++ A+
Sbjct:  829 VERIVFGTGKLMIDLAEQIGKMESLDWLHIVRIEELYPFPEEAVKDIIARYPNVKELVWVQEEPKNMGAWLYMEPRLRALAPEGV------DVSYIGRRRRASPAEGDPVVHRKEQERIIRCAL 946          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: KGD_MYCTU (2-oxoglutarate decarboxylase OS=Mycobacterium tuberculosis GN=kgd PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            + R++L SGK+YYEL   + K + +D+AI R+EQL P P   ++  L RY N  E  W QEEP N GA+    PR    +  +    +  IK + R   +A ++G  +VH  EQ E++ +A
Sbjct: 1113 VSRILLTSGKLYYELAARKAKDNRNDLAIVRLEQLAPLPRRRLRETLDRYENVKEFFWVQEEPANQGAW----PRFGLELPELLPDKLAGIKRISRRAMSAPSSGSSKVHAVEQQEILDEA 1229          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: KGD_MYCTA (2-oxoglutarate decarboxylase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=kgd PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            + R++L SGK+YYEL   + K + +D+AI R+EQL P P   ++  L RY N  E  W QEEP N GA+    PR    +  +    +  IK + R   +A ++G  +VH  EQ E++ +A
Sbjct: 1113 VSRILLTSGKLYYELAARKAKDNRNDLAIVRLEQLAPLPRRRLRETLDRYENVKEFFWVQEEPANQGAW----PRFGLELPELLPDKLAGIKRISRRAMSAPSSGSSKVHAVEQQEILDEA 1229          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: KGD_MYCBP (2-oxoglutarate decarboxylase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=kgd PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            + R++L SGK+YYEL   + K + +D+AI R+EQL P P   ++  L RY N  E  W QEEP N GA+    PR    +  +    +  IK + R   +A ++G  +VH  EQ E++ +A
Sbjct: 1113 VSRILLTSGKLYYELAARKAKDNRNDLAIVRLEQLAPLPRRRLRETLDRYENVKEFFWVQEEPANQGAW----PRFGLELPELLPDKLAGIKRISRRAMSAPSSGSSKVHAVEQQEILDEA 1229          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: KGD_MYCBO (2-oxoglutarate decarboxylase OS=Mycobacterium bovis GN=kgd PE=3 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 5.747e-15
Identity = 45/121 (37.19%), Postives = 68/121 (56.20%), Query Frame = 2
Query:   77 IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            + R++L SGK+YYEL   + K + +D+AI R+EQL P P   ++  L RY N  E  W QEEP N GA+    PR    +  +    +  IK + R   +A ++G  +VH  EQ E++ +A
Sbjct: 1113 VSRILLTSGKLYYELAARKAKDNRNDLAIVRLEQLAPLPRRRLRETLDRYENVKEFFWVQEEPANQGAW----PRFGLELPELLPDKLAGIKRISRRAMSAPSSGSSKVHAVEQQEILDEA 1229          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_BACSK (2-oxoglutarate dehydrogenase E1 component OS=Bacillus clausii (strain KSM-K16) GN=odhA PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 46/124 (37.10%), Postives = 71/124 (57.26%), Query Frame = 2
Query:   77 IRRLILCSGKVYYEL--YEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNAEVV-WSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            ++R+ILCSGK+  EL  Y  +     S + I RVE+L PFP   ++  LK +PN E V W QEEP NMGA+T++ PR+    + +  G    + Y+GR   ++ A G    H  EQ  ++ +++
Sbjct:  821 VKRIILCSGKLAIELQDYVNKNDEDWSWVHIIRVEELYPFPRRAIRERLKEFPNLEEVKWVQEEPKNMGAWTFMEPRI---REILPSGV--PLSYIGRTYRSSPAEGVSNAHKVEQKRIVTESL 939          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: ODO1_BACA2 (2-oxoglutarate dehydrogenase E1 component OS=Bacillus amyloliquefaciens (strain FZB42) GN=odhA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.084e-13
Identity = 51/144 (35.42%), Postives = 79/144 (54.86%), Query Frame = 2
Query:   20 TRFKRLIKDQNEHSDLEEGIRRLILCSGKVYYELYEERKKHSASD--IAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLC-TAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKAI 439
            +RFK  + +Q+  S   E + R++L SGKV  ++ +   K       + I R+EQL PFP    +    + PN  E+VW QEEP NMGA++YI+P L   A K V      +++Y+GR   ++ A G   VH KEQ  ++  ++
Sbjct:  804 SRFKP-VYEQSGLSHAYEKVTRVVLSSGKVSIDISDHFNKMEGDKDWLHIARIEQLYPFPAKDTKELFAKLPNLQEIVWVQEEPQNMGAWSYISPYLSEIAPKGV------NVQYIGRRRRSSPAEGDPTVHKKEQERIVSDSL 940          
BLAST of CX295218 vs. ExPASy Swiss-Prot
Match: KGD_MYCLE (2-oxoglutarate decarboxylase OS=Mycobacterium leprae GN=kgd PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.415e-13
Identity = 45/141 (31.91%), Postives = 73/141 (51.77%), Query Frame = 2
Query:   23 RFKRLIKDQNEHSDLEEG--IRRLILCSGKVYYELYEERKKHSASDIAICRVEQLCPFPYDLVQRELKRYPNA-EVVWSQEEPMNMGAYTYIAPRLCTAMKAVDRGTMEDIKYVGRAPSAASATGFYQVHVKEQSELMQKA 436
            +F+ ++++      +++   + R++L  GK+YYEL   + K +  D+AI R+EQL P P   +   L RY NA E  W QEEP N GA+      L   +       +  IK + R   +A ++G  +VH  EQ E++  A
Sbjct: 1101 KFRSVLEEPTYEDSIDDRSKVTRVLLTCGKLYYELAARKIKDNRDDVAIVRIEQLAPLPRRRLGETLDRYENAKEFFWVQEEPANQGAWPRFGLELPELLP-----RLTGIKRISRRAMSAPSSGSSKVHAVEQQEILDTA 1236          
The following BLAST results are available for this feature:
BLAST of CX295218 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 108
Match NameE-valueIdentityDescription
KGD_MYCPA2.580e-1537.192-oxoglutarate decarboxylase OS=Mycobacterium para... [more]
KGD_MYCS23.369e-1537.192-oxoglutarate decarboxylase OS=Mycobacterium smeg... [more]
ODO1_GEOKA4.400e-1539.522-oxoglutarate dehydrogenase E1 component OS=Geoba... [more]
KGD_MYCTU5.747e-1537.192-oxoglutarate decarboxylase OS=Mycobacterium tube... [more]
KGD_MYCTA5.747e-1537.192-oxoglutarate decarboxylase OS=Mycobacterium tube... [more]
KGD_MYCBP5.747e-1537.192-oxoglutarate decarboxylase OS=Mycobacterium bovi... [more]
KGD_MYCBO5.747e-1537.192-oxoglutarate decarboxylase OS=Mycobacterium bovi... [more]
ODO1_BACSK7.505e-1537.102-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
ODO1_BACA21.084e-1335.422-oxoglutarate dehydrogenase E1 component OS=Bacil... [more]
KGD_MYCLE1.415e-1331.912-oxoglutarate decarboxylase OS=Mycobacterium lepr... [more]

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Properties
Property NameValue
Genbank descriptionC05069H08SK PhIFruit1 Citrus clementina cDNA clone C05069H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295218 ID=CX295218; Name=CX295218; organism=Citrus clementina; type=EST; length=708bp
GGGTTTTCACAAACAAGGGACTAGATTTAAACGGCTTATAAAGGATCAGA
ATGAGCACTCTGATCTTGAGGAGGGTATCAGACGTCTGATTCTTTGTTCT
GGAAAAGTCTATTATGAGCTTTATGAAGAGCGAAAGAAGCACAGTGCAAG
TGACATTGCTATTTGTAGGGTGGAACAGCTTTGTCCTTTCCCATATGACC
TTGTCCAGCGGGAGCTTAAACGATATCCAAATGCCGAGGTTGTTTGGAGC
CAGGAAGAGCCAATGAACATGGGTGCGTATACCTACATAGCACCTCGCCT
TTGCACTGCCATGAAAGCAGTGGATAGAGGAACCATGGAGGACATCAAAT
ATGTTGGCCGTGCTCCATCTGCTGCCTCAGCCACCGGCTTCTATCAGGTT
CACGTTAAAGAACAGTCTGAGCTAATGCAGAAAGCCATTCAACCCGAACC
AATTGGTAATCCTTTCTGAAGTCTAATAAACCCTTGAGACCATTATAAGT
AGATTTTTTACTGCACCCAGATAAAACAAGCTGTGCAGTCTGAATTCTTC
TTGAAACCTTTATTCCGCACATTTATTTTGATGTTTGCAATACATTTCTG
CCAATTTGTCCATCGTTTTGTATCCGTAGTCATCATCTCCCCTTCTTCGT
CACGATACAAAACAGTAAATGTACGGGGTCACCGTATATCGTGTCAATTA
TGAAATTT
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