CX295270

Overview
NameCX295270
Unique NameCX295270
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B2_BOMMO (Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 1.429e-21
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 1
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDMK++E  VR+++MEGLLWGASKL PVGYGI KLQIM  I DD VSVD L E+
Sbjct:  139 ILLDVKPWDDETDMKEMENQVRTIEMEGLLWGASKLVPVGYGINKLQIMCVIEDDKVSVDLLTEK 203          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B_XENTR (Elongation factor 1-beta OS=Xenopus tropicalis GN=eef1b PE=2 SV=3)

HSP 1 Score: 102.449 bits (254), Expect = 2.438e-21
Identity = 48/64 (75.00%), Postives = 52/64 (81.25%), Query Frame = 1
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIE 702
            +LLDVKPWDDETDM KLEE VRS+QMEGL+WGASKL PVGYGIKKLQI   + DD V  D L E
Sbjct:  145 ILLDVKPWDDETDMAKLEECVRSIQMEGLVWGASKLVPVGYGIKKLQIQCVVEDDKVGTDVLEE 208          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1D_XENLA (Elongation factor 1-delta OS=Xenopus laevis GN=eef1d PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = 1
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM KLEE VR+VQM+GL+WG+SKL PVGYGIKKLQI   + DD V  D L EE
Sbjct:  182 ILLDVKPWDDETDMAKLEECVRTVQMDGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDILEEE 246          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B_DROME (Probable elongation factor 1-beta OS=Drosophila melanogaster GN=Ef1beta PE=1 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 7.094e-21
Identity = 47/65 (72.31%), Postives = 55/65 (84.62%), Query Frame = 1
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            VLLDVKPWDDETDMK++E  VR+++M+GLLWGASKL PVGYGI KLQIM  I DD VS+D L E+
Sbjct:  139 VLLDVKPWDDETDMKEMENNVRTIEMDGLLWGASKLVPVGYGINKLQIMCVIEDDKVSIDLLQEK 203          

HSP 2 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 31/59 (52.54%), Postives = 45/59 (76.27%), Query Frame = 1
Query:  100 VAFDNVNSATGLKKLDEYLLTRSYITGYQASKDDITVYSALSKAPSSEYVNVSRWYKHI 276
            +AF +V +  GLK+L+ +L   SYI+GY  SK D++V+ AL KAPS++ VNV+RWY+HI
Sbjct:    1 MAFGDVTTPQGLKELNAFLADNSYISGYTPSKADLSVFDALGKAPSADNVNVARWYRHI 59          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B_XENLA (Elongation factor 1-beta OS=Xenopus laevis GN=eef1b PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.210e-20
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 1
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM KLEE +RS+QM+GLLWG+SKL PVGYGIKKLQI   + DD V  D L E+
Sbjct:  144 ILLDVKPWDDETDMGKLEECLRSIQMDGLLWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDVLEEK 208          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B_MOUSE (Elongation factor 1-beta OS=Mus musculus GN=Eef1b PE=1 SV=5)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD V  D L E+
Sbjct:  142 ILLDVKPWDDETDMTKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ 206          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B_HUMAN (Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2 PE=1 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD V  D L E+
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ 206          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B_CHICK (Elongation factor 1-beta OS=Gallus gallus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD V  D L E+
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ 206          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B_BOVIN (Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE=2 SV=3)

HSP 1 Score: 98.2117 bits (243), Expect = 4.598e-20
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD V  D L E+
Sbjct:  142 ILLDVKPWDDETDMAKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ 206          
BLAST of CX295270 vs. ExPASy Swiss-Prot
Match: EF1B_RABIT (Elongation factor 1-beta OS=Oryctolagus cuniculus GN=EEF1B PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.005e-20
Identity = 45/65 (69.23%), Postives = 52/65 (80.00%), Query Frame = 1
Query:  511 VLLDVKPWDDETDMKKLEEAVRSVQMEGLLWGASKLAPVGYGIKKLQIMLTIVDDLVSVDTLIEE 705
            +LLDVKPWDDETDM KLEE VRS+Q +GL+WG+SKL PVGYGIKKLQI   + DD V  D L E+
Sbjct:  142 ILLDVKPWDDETDMVKLEECVRSIQADGLVWGSSKLVPVGYGIKKLQIQCVVEDDKVGTDMLEEQ 206          
The following BLAST results are available for this feature:
BLAST of CX295270 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1B2_BOMMO1.429e-2173.85Elongation factor 1-beta' OS=Bombyx mori PE=1 SV=2[more]
EF1B_XENTR2.438e-2175.00Elongation factor 1-beta OS=Xenopus tropicalis GN=... [more]
EF1D_XENLA7.094e-2172.31Elongation factor 1-delta OS=Xenopus laevis GN=eef... [more]
EF1B_DROME7.094e-2172.31Probable elongation factor 1-beta OS=Drosophila me... [more]
EF1B_XENLA1.210e-2070.77Elongation factor 1-beta OS=Xenopus laevis GN=eef1... [more]
EF1B_MOUSE4.598e-2069.23Elongation factor 1-beta OS=Mus musculus GN=Eef1b ... [more]
EF1B_HUMAN4.598e-2069.23Elongation factor 1-beta OS=Homo sapiens GN=EEF1B2... [more]
EF1B_CHICK4.598e-2069.23Elongation factor 1-beta OS=Gallus gallus GN=EEF1B... [more]
EF1B_BOVIN4.598e-2069.23Elongation factor 1-beta OS=Bos taurus GN=EEF1B PE... [more]
EF1B_RABIT6.005e-2069.23Elongation factor 1-beta OS=Oryctolagus cuniculus ... [more]

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Properties
Property NameValue
Genbank descriptionC05070D12SK PhIFruit1 Citrus clementina cDNA clone C05070D12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295270 ID=CX295270; Name=CX295270; organism=Citrus clementina; type=EST; length=714bp
AGGCCTCGTGCCGAATTCGGCACGAGGGTAGAGACCTCGCCACTCTCCCT
CCGAGCTAATCTCCCCATTGCTCTTTCTCTCTCCGTTACAGCTATGGCCG
TCGCATTCGATAATGTCAACTCAGCCACTGGTCTGAAGAAACTCGATGAA
TACCTTCTTACTCGCAGTTACATTACTGGGTACCAAGCTTCAAAGGATGA
TATCACTGTGTATTCAGCTCTTTCAAAAGCACCATCATCTGAATATGTCA
ATGTGTCTCGGTGGTACAAGCATATTGATGCACTCTTAAGGATCTCTGGC
GTTACTGGTGAAGGCTCTGGTGTCACTGTAGAGGGATCTGCTCCTGTTGC
TACTCCCCCGGTAGCTGACTCAAAGGCAGCAGCTCCTGATGATGACGACG
ATGATGTGGATCTATTTGGTGAGGAGACAGAAGAGGAAAAGAAGGCTGCC
GAGGCACGCGCGGCTTCCGTCAAAGCATCAGCCAAAAAGAAAGAATCTGG
CAAGTCATCAGTTCTATTGGATGTGAAGCCTTGGGATGATGAGACTGACA
TGAAGAAGCTTGAGGAAGCAGTAAGAAGTGTTCAGATGGAAGGATTACTC
TGGGGAGCCAGCAAACTTGCACCTGTTGGATATGGTATCAAGAAATTGCA
AATAATGCTTACAATTGTGGATGACTTGGTGTCTGTTGACACCCTCATTG
AGGAACACCTGCTG
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