CX295311

Overview
NameCX295311
Unique NameCX295311
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length702
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_LOTJA (ATP synthase subunit c, chloroplastic OS=Lotus japonicus GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_GNEPA (ATP synthase subunit c, chloroplastic OS=Gnetum parvifolium GN=atpH PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.025e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPIISAASVIAAGLAVGLASIGPGVGQGTAAGQALEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_WHEAT (ATP synthase subunit c, chloroplastic OS=Triticum aestivum GN=atpH PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_STAPU (ATP synthase subunit c, chloroplastic OS=Staurastrum punctulatum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNP+ISAASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPVISAASVIAAGLAVGLASIGPGIGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_SPIOL (ATP synthase subunit c, chloroplastic OS=Spinacia oleracea GN=atpH PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_SORBI (ATP synthase subunit c, chloroplastic OS=Sorghum bicolor GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_SOLBU (ATP synthase subunit c, chloroplastic OS=Solanum bulbocastanum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_SACOF (ATP synthase subunit c, chloroplastic OS=Saccharum officinarum GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_SACHY (ATP synthase subunit c, chloroplastic OS=Saccharum hybrid GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
[Close]
BLAST of CX295311 vs. ExPASy Swiss-Prot
Match: ATPH_ORYSJ (ATP synthase subunit c, chloroplastic OS=Oryza sativa subsp. japonica GN=atpH PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.869e-25
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 2 
Query:  422 MNPLISAASVIAAGLAVGLASIXXXXXXXXXXXXXXXXIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 664
            MNPLI+AASVIAAGLAVGLASI                IARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV
Sbjct:    1 MNPLIAAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFANPFV 81
The following BLAST results are available for this feature:
BLAST of CX295311 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 173
Match NameE-valueIdentityDescription
ATPH_LOTJA6.025e-2579.01ATP synthase subunit c, chloroplastic OS=Lotus jap... [more]
ATPH_GNEPA6.025e-2579.01ATP synthase subunit c, chloroplastic OS=Gnetum pa... [more]
ATPH_WHEAT7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Triticum ... [more]
ATPH_STAPU7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Staurastr... [more]
ATPH_SPIOL7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Spinacia ... [more]
ATPH_SORBI7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Sorghum b... [more]
ATPH_SOLBU7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Solanum b... [more]
ATPH_SACOF7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Saccharum... [more]
ATPH_SACHY7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Saccharum... [more]
ATPH_ORYSJ7.869e-2579.01ATP synthase subunit c, chloroplastic OS=Oryza sat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05070H05SK PhIFruit1 Citrus clementina cDNA clone C05070H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295311 ID=CX295311; Name=CX295311; organism=Citrus clementina; type=EST; length=702bp
ATATCTAATCCACCCTACTCTTGTGATTATTGTGAATTTCGATAGGGATT
CTAATAGAAATTGTTCGATTTCGTCTTTGCTTTGATGCTTTGACTGGGAA
TTGAATCAATAAAAATAAAGAGATGAAAGAAAGAAAACGAACGAAGAATT
CAAAAAAGGGTTCCGAAAAAAGAAATGGAAGAACAAAAGTCGTATGGATT
TACAAAAATCCTGTGTTGTGCCTGTGGATCGAAACTAAAAAAGAGATATC
TAAAAAGTTTTGATGGTTCAATAATAATATTATTATTACGCCAATTGGGA
GTTCTTAGTTACTTCGGCTGGGCGAATCCTAGTGACGGAATAATTAAGTC
ATAATTTATTGGACGATTGTATCATTAACGATTTCTTTAGTTTTTCTTTA
TTTTAGTGCGAGGGACTTATCATGAATCCACTGATTTCTGCCGCTTCCGT
TATTGCTGCTGGGTTGGCTGTTGGGCTTGCTTCTATTGGACCTGGAGTTG
GTCAAGGTACTGCTGCGGGCCAGGCAGTAGAAGGGATCGCGAGACAGCCC
GAGGCGGAGGGAAAAATACGAGGTACTTTATTGCTTAGTCTGGCTTTTAT
GGAAGCTTTAACAATTTATGGGCTGGTTGTAGCATTAGCACTTTTATTTG
CGAATCCTTTTGTTTAATCCTAGAAATAGGAAGGGCAATTTACAATTTAC
TT
back to top