CX295326
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: POL_BAEVM (Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11 Identity = 49/171 (28.65%), Postives = 74/171 (43.27%), Query Frame = 1 Query: 4 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKD---AKTRLIRWVLLLQEFD 507 REVR FLG AGF R +I F++++ PL L + PF + +AFE LK L S+P + P+ S PF L D VL Q++ + Y S L+ + + M A ++ +G + + T H + D RL + LL + D Sbjct: 416 REVREFLGTAGFCRLWIPGFAELAAPLYALTKESTPFTWQTEHQLAFEALKKALLSAPALGLPDTSKPFTLFLDERQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPHTLEAIVRQPPDRWITNARLTHYQALLLDTD 586
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: POL_KORV (Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11 Identity = 41/141 (29.08%), Postives = 67/141 (47.52%), Query Frame = 1 Query: 4 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDH 426 R+VR FLG AGF R +I F+ ++ PL L + PF + ++ AF ++K L S+P + P+ + PF L D + VL Q + + Y S L+ + T K + AV L+ +G +++ H Sbjct: 377 RQVREFLGTAGFCRLWIPGFASLAAPLYPLTREKVPFTWTEAHQEAFGRIKEALLSAPALALPDLTKPFALYVDEKEGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAIAAVALLLKDADKLTLGQNVLVIAPH 517
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: POL_GALV (Pol polyprotein OS=Gibbon ape leukemia virus GN=pol PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11 Identity = 41/142 (28.87%), Postives = 66/142 (46.48%), Query Frame = 1 Query: 4 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHA 429 R+VR FLG AGF R +I F+ ++ PL L + PF++ + AF+ +K L S+P + P+ + PF L D VL Q + + Y S L+ + T K + AV L+ +G + + H+ Sbjct: 415 RQVREFLGTAGFCRLWIPGFASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLYIDERAGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAVAAVALLLKDADKLTLGQNVTVIASHS 556 The following BLAST results are available for this feature:
BLAST of CX295326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 23
Pages
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX295326 ID=CX295326; Name=CX295326; organism=Citrus clementina; type=EST; length=673bpback to top |