CX295326

Overview
NameCX295326
Unique NameCX295326
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: POL_BAEVM (Pol polyprotein OS=Baboon endogenous virus (strain M7) GN=pol PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.056e-11
Identity = 49/171 (28.65%), Postives = 74/171 (43.27%), Query Frame = 1
Query:    4 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHAALKYLLTKKD---AKTRLIRWVLLLQEFD 507
            REVR FLG AGF R +I  F++++ PL  L  +  PF +     +AFE LK  L S+P +  P+ S PF L  D        VL Q++      + Y S  L+     +    + M A    ++      +G  + + T H     +    D      RL  +  LL + D
Sbjct:  416 REVREFLGTAGFCRLWIPGFAELAAPLYALTKESTPFTWQTEHQLAFEALKKALLSAPALGLPDTSKPFTLFLDERQGIAKGVLTQKLGPWKRPVAYLSKKLDPVAAGWPPCLRIMAATAMLVKDSAKLTLGQPLTVITPHTLEAIVRQPPDRWITNARLTHYQALLLDTD 586          
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: POL_KORV (Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.685e-11
Identity = 41/141 (29.08%), Postives = 67/141 (47.52%), Query Frame = 1
Query:    4 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDH 426
            R+VR FLG AGF R +I  F+ ++ PL  L  +  PF + ++   AF ++K  L S+P +  P+ + PF L  D  +     VL Q +      + Y S  L+     + T  K + AV   L+      +G  +++   H
Sbjct:  377 RQVREFLGTAGFCRLWIPGFASLAAPLYPLTREKVPFTWTEAHQEAFGRIKEALLSAPALALPDLTKPFALYVDEKEGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAIAAVALLLKDADKLTLGQNVLVIAPH 517          
BLAST of CX295326 vs. ExPASy Swiss-Prot
Match: POL_GALV (Pol polyprotein OS=Gibbon ape leukemia virus GN=pol PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.813e-11
Identity = 41/142 (28.87%), Postives = 66/142 (46.48%), Query Frame = 1
Query:    4 REVRSFLGHAGFYRRFIKDFSKVSRPLCNLLAKDAPFVFNDSCLVAFEKLKHLLTSSPIIQPPNWSLPFELMCDASDYAVGAVLGQRVDLIPHVIYYASMTLNDAQLNYSTTEKEMLAVVFALEKFRSYLIGCKIIIFTDHA 429
            R+VR FLG AGF R +I  F+ ++ PL  L  +  PF++ +    AF+ +K  L S+P +  P+ + PF L  D        VL Q +      + Y S  L+     + T  K + AV   L+      +G  + +   H+
Sbjct:  415 RQVREFLGTAGFCRLWIPGFASLAAPLYPLTKESIPFIWTEEHQQAFDHIKKALLSAPALALPDLTKPFTLYIDERAGVARGVLTQTLGPWRRPVAYLSKKLDPVASGWPTCLKAVAAVALLLKDADKLTLGQNVTVIASHS 556          
The following BLAST results are available for this feature:
BLAST of CX295326 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
POL_BAEVM2.056e-1128.65Pol polyprotein OS=Baboon endogenous virus (strain... [more]
POL_KORV2.685e-1129.08Pro-Pol polyprotein OS=Koala retrovirus GN=pro-pol... [more]
POL_GALV7.813e-1128.87Pol polyprotein OS=Gibbon ape leukemia virus GN=po... [more]

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Properties
Property NameValue
Genbank descriptionC05071A08SK PhIFruit1 Citrus clementina cDNA clone C05071A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295326 ID=CX295326; Name=CX295326; organism=Citrus clementina; type=EST; length=673bp
GTCAGAGAAGTAAGATCTTTCCTTGGGCATGCTGGTTTCTATAGACGTTT
CATTAAAGATTTTAGCAAAGTTTCTAGACCCTTATGCAATTTACTTGCTA
AGGATGCACCTTTTGTCTTTAATGATTCATGTCTTGTGGCATTTGAAAAA
TTAAAGCATTTGTTGACATCATCACCCATCATTCAGCCCCCAAACTGGAG
CTTACCATTTGAGCTCATGTGTGATGCATCTGACTATGCAGTAGGAGCAG
TATTAGGACAAAGAGTTGATCTAATTCCCCACGTTATTTACTATGCTAGT
ATGACATTAAATGATGCACAGTTGAACTATTCAACTACTGAAAAAGAAAT
GCTAGCAGTAGTGTTTGCATTGGAAAAATTTCGATCATATCTCATTGGTT
GTAAAATAATTATATTCACGGATCATGCTGCTCTTAAATATCTTCTCACA
AAGAAAGATGCAAAAACTAGACTAATTCGTTGGGTGTTACTTTTGCAGGA
ATTTGACTTGGAATTCAAAGATAAGAAAGGGACAGAAAATATTGTGGCGG
ACCACCTTTCTCGTCTCCATTTTGACACAACTACAGAGCCCTTACCATTA
AATGAGTCATTCCCTGATGAACAATTGATGAATGTGGAAGTATTACCGTG
GTATGCTGACATCGTGAATTATC
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