CX295332

Overview
NameCX295332
Unique NameCX295332
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: ALL8_OLEEU (Calcium-binding allergen Ole e 8 OS=Olea europaea PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 46/157 (29.30%), Postives = 73/157 (46.50%), Query Frame = 3
Query:   78 NDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 548
            N++Q +F + D NGDG +S +EL  VL+ +G + + EE+  ++E+     D F+                                        L +AF ++D + +G I+S EL  +L RLG  +  +  DC  MI   D++ DG + FEEFK MM
Sbjct:   19 NEVQGVFNRFDANGDGKISGDELAGVLKALGSNTSKEEIGRIMEEIDTDKDGFI----------------NVQEFAAFVKAETDPYPSSGGENELKEAFELYDQDHNGLISSVELHKILTRLG--ERYAEHDCVEMIKSVDSDGDGYVSFEEFKKMM 157          
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: CML6_ORYSJ (Putative calmodulin-like protein 6 OS=Oryza sativa subsp. japonica GN=CML6 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.760e-11
Identity = 48/164 (29.27%), Postives = 77/164 (46.95%), Query Frame = 3
Query:   78 NDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVE------KPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMML 551
            +D +  F   D+N DG +S EEL  VL R+G+  + E+L+ ++         ++ FDEFL      +                                 L KAF +FD + +GFI+  EL  V+A LG  +E +  +   M+   D+N+DG +D+EEFK +M+
Sbjct:   11 SDFRDAFSLFDKNNDGCISREELATVLTRLGMAPSQEDLQDMIVAVDEDGNGTIEFDEFLAIMKKKL----------------------YENDKGDDEEELRKAFRIFDKDDNGFISRNELSMVMASLG--EEMTEDEIDDMMKAADSNNDGQVDYEEFKRVMM 150          
BLAST of CX295332 vs. ExPASy Swiss-Prot
Match: CALM4_MOUSE (Calmodulin-4 OS=Mus musculus GN=Calm4 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 46/169 (27.22%), Postives = 77/169 (45.56%), Query Frame = 3
Query:   48 LTHNMAPLTANDLQRIFEKLDRNGDGLVSLEELNWVLERIGVHFTLEELEALVEK------PSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEF 536
            ++H        + Q  F + D+N DG +S+EEL  V++++G +   ++L+AL+ K        + F+EFL   +                                    L   F+V D NGDG+IT +EL+  L++LG  +  S ++   MI V D + DG + +EEF
Sbjct:    1 MSHGFTKEEVAEFQAAFNRFDKNKDGHISVEELGDVMKQLGKNLPEKDLKALISKLDTDGDGKISFEEFLTAIEKY--------------------------KKGHRAGELRAVFNVLDQNGDGYITVDELKESLSKLG--ESLSQEELEDMIRVADVDQDGKVKYEEF 141          
The following BLAST results are available for this feature:
BLAST of CX295332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ALL8_OLEEU2.879e-1129.30Calcium-binding allergen Ole e 8 OS=Olea europaea ... [more]
CML6_ORYSJ3.760e-1129.27Putative calmodulin-like protein 6 OS=Oryza sativa... [more]
CALM4_MOUSE8.376e-1127.22Calmodulin-4 OS=Mus musculus GN=Calm4 PE=2 SV=2[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05071B02SK PhIFruit1 Citrus clementina cDNA clone C05071B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295332 ID=CX295332; Name=CX295332; organism=Citrus clementina; type=EST; length=698bp
CATCTCTGGATTGTTAGTTAGTTAATTAGCATTGTATATTATTGTCACTC
ACTCACAATATGGCTCCTCTTACCGCCAATGACTTGCAAAGAATTTTCGA
GAAGCTTGATCGAAATGGCGATGGCCTGGTGAGCTTGGAGGAACTCAACT
GGGTTCTTGAAAGAATTGGGGTACATTTTACCCTTGAAGAGCTTGAAGCC
CTAGTTGAAAAACCAAGCCTCTGCTTCGATGAATTCTTGTTCTTCTGTGA
TTCCATCATATCGAATAATAATAATAATAATCCCAATGCTGCTGCTGATG
CTTCCCAGAATGCTGATGAAGCAGCTGATGATGACAGCGGCGACGAAGAG
ATCAGTGATCTTTACAAAGCGTTCAGTGTGTTCGATGTGAATGGTGATGG
ATTCATTACAAGCGAAGAGCTTCAGAGTGTGTTGGCGAGACTCGGATTGT
GGGATGAGAAAAGCAGCCAAGATTGCAGAAGCATGATTTACGTGTATGAT
ACCAATTCTGATGGGGTTCTTGATTTTGAAGAATTCAAGAACATGATGCT
TCGTAGTACTGTTTCTTAATTCGTTATTAATTTCGTGCCTGTTAATCTTG
ACCTTGTTTTTTTTTTTTTTTATAATCTGTGAAATTATGTTGATTATATG
ATGGTCGTAATTTGTTAGACCCGAGATCAACATAATTAGCCGAGCTTA
back to top