CX295338

Overview
NameCX295338
Unique NameCX295338
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGAL1_ARATH (Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BGAL1 PE=1 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.628e-28
Identity = 62/150 (41.33%), Postives = 91/150 (60.67%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINK-MAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARC 449
            VPRSWL+ S NLLV+FEE GG+P  I++  R    VC  + E     V     +Y +     +NK + P+ HL C  G  I++++FAS+GTP+G C  + +G+CHA  S    ++ C G++ CS+ +   +FGGDPC  ++K LAVEA C
Sbjct:  702 VPRSWLKPSGNLLVVFEEWGGDPNGITLVRREVDSVCADIYEWQSTLV-----NYQLHASGKVNKPLHPKAHLQCGPGQKITTVKFASFGTPEGTCGSYRQGSCHAHHSYDAFNKLCVGQNWCSVTVAPEMFGGDPCPNVMKKLAVEAVC 846          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGAL_ASPOF (Beta-galactosidase OS=Asparagus officinalis PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.793e-27
Identity = 67/155 (43.23%), Postives = 87/155 (56.13%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKW-SNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSV-----VSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARC 449
            VPRSWL  + N LV+ EE GG+P  IS+  RS   VC +V E   P +  W + +Y            P++HL C  G  +S I+FAS+GTPQG C  FS G+CHA  S        + + C G+  CS+ +   VFGGDPC G +K LAVEA C
Sbjct:  688 VPRSWLIPTGNFLVVLEEWGGDPTGISMVKRSVASVCAEVEELQ-PTMDNWRTKAYG----------RPKVHLSCDPGQKMSKIKFASFGTPQGTCGSFSEGSCHAHKSYDAFEQEGLMQNCVGQEFCSVNVAPEVFGGDPCPGTMKKLAVEAIC 831          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGA16_ARATH (Beta-galactosidase 16 OS=Arabidopsis thaliana GN=BGAL16 PE=2 SV=2)

HSP 1 Score: 114.39 bits (285), Expect = 5.824e-25
Identity = 68/158 (43.04%), Postives = 92/158 (58.23%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETG-GNPFEISVKLRSTRIVCEQVSESHYPPV----RKWSN----SYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARC 449
            +PRS+L+ ++NLLVI EE   GNP  I++   S   VC  VS ++  PV    +K  N    +Y  D K       P++ L C  G  IS I FAS+GTP G C  +S G+CH+P SL+VV +AC  KS CS+ + +  FGGD C   VK+L V A+C
Sbjct:  664 IPRSFLKPNSNLLVILEEEREGNPLGITIDTVSVTEVCGHVSNTNPHPVISPRKKGLNRKNLTYRYDRK-------PKVQLQCPTGRKISKILFASFGTPNGSCGSYSIGSCHSPNSLAVVQKACLKKSRCSVPVWSKTFGGDSCPHTVKSLLVRAQC 814          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGA11_ORYSJ (Beta-galactosidase 11 OS=Oryza sativa subsp. japonica GN=Os08g0549200 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 59/156 (37.82%), Postives = 83/156 (53.21%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVR-----KWSNSYSVDGK-LSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGD-PCRGIVKTLAVEARC 449
            VPRS L+   N L+ FEE GG P  I +       +C  ++E +   VR     K S   +V G       + P   L C     I S+ FASYG P G C  ++ G+CHAP +  VV +AC G+ +CS+ +++ V+GGD  C G   TLAV+A+C
Sbjct:  681 VPRSLLRPKGNTLMFFEEEGGKPDAIMILTVKRDNICTFMTEKNPAHVRWSWESKDSQPKAVAGAGAGAGGLKPTAVLSCPTKKTIQSVVFASYGNPLGICGNYTVGSCHAPRTKEVVEKACIGRKTCSLVVSSEVYGGDVHCPGTTGTLAVQAKC 836          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGA13_ARATH (Beta-galactosidase 13 OS=Arabidopsis thaliana GN=BGAL13 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.641e-19
Identity = 55/157 (35.03%), Postives = 82/157 (52.23%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGG-NPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHL----HCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVF---GGDPCRGIVKTLAVEARC 449
            +PRS+L+   NLLVIFEE     P  I   + +   VC  + E++ P VR W+          +  +  ++HL     C     IS++EFAS+G P G C  F+ G+C+AP+S  VV + C GK+ C I +  + F     D C  + K LAV+ +C
Sbjct:  691 IPRSFLKPKKNLLVIFEEEPNVKPELIDFVIVNRDTVCSYIGENYTPSVRHWTRKND-----QVQAITDDVHLTANLKCSGTKKISAVEFASFGNPNGTCGNFTLGSCNAPVSKKVVEKYCLGKAECVIPVNKSTFEQDKKDSCPKVEKKLAVQVKC 842          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGA11_ARATH (Beta-galactosidase 11 OS=Arabidopsis thaliana GN=BGAL11 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.641e-19
Identity = 54/153 (35.29%), Postives = 83/153 (54.25%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGG-NPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVF---GGDPCRGIVKTLAVEARC 449
            +PRS+L+   NLLVIFEE     P  +   + +   VC  V E++ P VR W+        ++ N ++    L C     I+++EFAS+G P G C  F+ G C+AP+S  V+ + C GK+ C I +  + F     D C+ +VK LAV+ +C
Sbjct:  688 IPRSFLKPKKNLLVIFEEEPNVKPELMDFAIVNRDTVCSYVGENYTPSVRHWTRKKDQVQAITDN-VSLTATLKCSGTKKIAAVEFASFGNPIGVCGNFTLGTCNAPVSKQVIEKHCLGKAECVIPVNKSTFQQDKKDSCKNVVKMLAVQVKC 839          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGA12_ORYSJ (Beta-galactosidase 12 OS=Oryza sativa subsp. japonica GN=Os09g0539200 PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.064e-18
Identity = 51/150 (34.00%), Postives = 78/150 (52.00%), Query Frame = 3
Query:    3 VPRSWLQASNNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDG---KLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGD-PCRGIVKTLAVE 440
            +PR++L+   NLL+IFEE  G P  I ++      +C  +SE +   ++ W +    DG   KL     +    L+C     I  + FAS+G P+G C  F+ G CH P + ++V + C GK SC + + N V+G D  C     TLAV+
Sbjct:  682 IPRAFLKPKGNLLIIFEEELGKPGGILIQTVRRDDICVFISEHNPAQIKTWES----DGGQIKLIAEDTSTRGTLNCPPKRTIQEVVFASFGNPEGACGNFTAGTCHTPDAKAIVEKECLGKESCVLPVVNTVYGADINCPATTATLAVQ 827          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGA14_ARATH (Beta-galactosidase 14 OS=Arabidopsis thaliana GN=BGAL14 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 51/155 (32.90%), Postives = 77/155 (49.68%), Query Frame = 3
Query:    3 VPRSWLQASN--NLLVIFEETGGNPFE-ISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINK---MAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLSVVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARC 449
            +PRS+++     N+LVI EE  G   E I   L +   +C  V E +   V+ W      +G   +++   M  +  + C     +  ++FAS+G P G C  F+ G C A  S  VV + C G++ CSI +    FG   C  IVKTLAV+ +C
Sbjct:  687 IPRSFMKGEKKKNMLVILEEEPGVKLESIDFVLVNRDTICSNVGEDYPVSVKSWKR----EGPKIVSRSKDMRLKAVMRCPPEKQMVEVQFASFGDPTGTCGNFTMGKCSASKSKEVVEKECLGRNYCSIVVARETFGDKGCPEIVKTLAVQVKC 837          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGA15_ARATH (Beta-galactosidase 15 OS=Arabidopsis thaliana GN=BGAL15 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.438e-15
Identity = 52/151 (34.44%), Postives = 75/151 (49.67%), Query Frame = 3
Query:    3 VPRSWLQAS-NNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPMSLS-VVSEACQGKSSCSIGITNAVFGGDPCRGIVKTLAVEARC 449
            VPRS+L +  +N LV+FEE GGNP  ++ +      VC  V E +                         + L C +G  IS+I+FAS+G P G C  F +G C A  + + ++++ C GK  CSI ++   FG   C  + K LAVEA C
Sbjct:  654 VPRSFLNSEGDNTLVLFEEIGGNPSLVNFQTIGVGSVCANVYEKNV------------------------LELSC-NGKPISAIKFASFGNPGGDCGSFEKGTCEASNNAAAILTQECVGKEKCSIDVSEDKFGAAECGALAKRLAVEAIC 779          
BLAST of CX295338 vs. ExPASy Swiss-Prot
Match: BGAL7_ARATH (Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BGAL7 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 47/152 (30.92%), Postives = 72/152 (47.37%), Query Frame = 3
Query:    3 VPRSWLQAS-NNLLVIFEETGGNPFEISVKLRSTRIVCEQVSESHYPPVRKWSNSYSVDGKLSINKMAPEMHLHCQDGYIISSIEFASYGTPQGRCQKFSRGNCHAPM-SLSVVSEACQGKSSCSIGITNAVFGGD-PCRGIVKTLAVEARC 449
            VPRS+L AS +N + +FEE GGNP  ++ K      VC +  E +                        ++ L C +  I S+++FAS+G P G C  F+ G C     +   V++ C GK +C++ +++  FG    C    K LAVE  C
Sbjct:  700 VPRSFLNASGHNTITLFEEMGGNPSMVNFKTVVVGTVCARAHEHN------------------------KVELSCHNRPI-SAVKFASFGNPLGHCGSFAVGTCQGDKDAAKTVAKECVGKLNCTVNVSSDTFGSTLDCGDSPKKLAVELEC 826          
The following BLAST results are available for this feature:
BLAST of CX295338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
BGAL1_ARATH5.628e-2841.33Beta-galactosidase 1 OS=Arabidopsis thaliana GN=BG... [more]
BGAL_ASPOF2.793e-2743.23Beta-galactosidase OS=Asparagus officinalis PE=2 S... [more]
BGA16_ARATH5.824e-2543.04Beta-galactosidase 16 OS=Arabidopsis thaliana GN=B... [more]
BGA11_ORYSJ2.532e-2037.82Beta-galactosidase 11 OS=Oryza sativa subsp. japon... [more]
BGA13_ARATH1.641e-1935.03Beta-galactosidase 13 OS=Arabidopsis thaliana GN=B... [more]
BGA11_ARATH1.641e-1935.29Beta-galactosidase 11 OS=Arabidopsis thaliana GN=B... [more]
BGA12_ORYSJ1.064e-1834.00Beta-galactosidase 12 OS=Oryza sativa subsp. japon... [more]
BGA14_ARATH6.454e-1632.90Beta-galactosidase 14 OS=Arabidopsis thaliana GN=B... [more]
BGA15_ARATH1.438e-1534.44Beta-galactosidase 15 OS=Arabidopsis thaliana GN=B... [more]
BGAL7_ARATH7.385e-1230.92Beta-galactosidase 7 OS=Arabidopsis thaliana GN=BG... [more]

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Properties
Property NameValue
Genbank descriptionC05071B08SK PhIFruit1 Citrus clementina cDNA clone C05071B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295338 ID=CX295338; Name=CX295338; organism=Citrus clementina; type=EST; length=691bp
GGGTGCCACGGTCATGGTTGCAAGCATCAAATAATTTACTCGTCATCTTT
GAGGAAACAGGAGGCAATCCGTTTGAGATTTCAGTCAAGTTGCGTTCAAC
TCGAATTGTCTGTGAACAAGTTTCAGAGTCCCACTACCCACCTGTTAGGA
AGTGGTCCAATTCATATTCTGTTGATGGAAAATTGTCGATAAATAAGATG
GCACCAGAAATGCATTTGCATTGTCAAGATGGATATATTATCTCTTCCAT
AGAATTTGCTAGCTATGGTACCCCTCAGGGTCGCTGCCAGAAATTTTCAA
GGGGCAACTGCCATGCGCCCATGTCATTATCCGTGGTGTCTGAGGCTTGC
CAAGGTAAAAGTAGCTGTTCCATAGGAATTACAAATGCTGTGTTTGGAGG
TGACCCATGCCGCGGCATTGTGAAGACATTAGCTGTTGAGGCAAGATGCA
TCCCCTCATCGAATACTGGTTTCTCTCAGATTTAAGTGACAAATTGCCGC
AAGATGTTCGCGGTTGATACCCTAAATCTATTACAAAAAGCAAACTGTTT
TCATTGCATTCTGTCCGCATTTCAGGCCGACAGGTCGCATGGGAAATCCA
GTTGTATAATTTATACATGTTGCAGCATCTGCTGTTGTATTCTACGGGGT
ACATAAACCTGTTATAACATTTGCACATGCCCCTTGCCCAA
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