CX295384

Overview
NameCX295384
Unique NameCX295384
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length589
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295384 vs. ExPASy Swiss-Prot
Match: NLTP4_ARATH (Non-specific lipid-transfer protein 4 OS=Arabidopsis thaliana GN=LTP4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.692e-21
Identity = 49/108 (45.37%), Postives = 70/108 (64.81%), Query Frame = 1
Query:   52 CLMGSAFV--STKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 369
            C + + F+  S  A +TC TV + LSPC+ Y+S GG V   CC GV+ L   A++T DRQ  C CL+ A  G++ +     LA+GLPGKCG++IPY IS ST+C+ ++
Sbjct:   10 CFVLTVFIVASVDAAITCGTVASSLSPCLGYLSKGGVVPPPCCAGVKKLNGMAQTTPDRQQACRCLQSAAKGVNPS-----LASGLPGKCGVSIPYPISTSTNCATIK 112          
BLAST of CX295384 vs. ExPASy Swiss-Prot
Match: NLTP1_PRUDO (Non-specific lipid-transfer protein 1 OS=Prunus domestica PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.692e-21
Identity = 50/93 (53.76%), Postives = 66/93 (70.97%), Query Frame = 1
Query:   91 VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 369
            +TC  V ++L+PCI+YV  GGAV   CCNG+R + N AR+TADR+  C CLKQ +SG S        AA LPGKCG+N+PY+IS ST+C+ V+
Sbjct:    1 ITCGQVSSNLAPCINYVKGGGAVPPACCNGIRNVNNLARTTADRRAACNCLKQ-LSG-SIPGVNPNNAAALPGKCGVNVPYKISASTNCATVK 91          
BLAST of CX295384 vs. ExPASy Swiss-Prot
Match: SCA_LILLO (Stigma/stylar cysteine-rich adhesin OS=Lilium longiflorum GN=SCA PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.887e-21
Identity = 48/112 (42.86%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   34 CILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 369
            C L+L+  +    + T + +TC  V +DL+ C+ Y   GG +   CC GVRTL N A++T DRQT C CLK  V+          + AG+PGKCG+NIPY I   TDC++V+
Sbjct:    8 CFLLLLAFL----IGTASAITCGQVDSDLTSCLGYARKGGVIPPGCCAGVRTLNNLAKTTPDRQTACNCLKSLVN--PSLGLNAAIVAGIPGKCGVNIPYPIRMQTDCNKVR 113          
BLAST of CX295384 vs. ExPASy Swiss-Prot
Match: NLTP6_LENCU (Non-specific lipid-transfer protein 6 OS=Lens culinaris PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 2.887e-21
Identity = 51/118 (43.22%), Postives = 77/118 (65.25%), Query Frame = 1
Query:   16 MKLVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 369
            MKL   C+++++C++  A ++  A ++C  V +DLSPC++Y++ G   +  CC GV+ L  AA +T DRQ  C CLK A   I  T+     AA LPGKCG++IPY+IS ST+C+ V+
Sbjct:    5 MKLA--CVVLVMCMVVIAPMAEGA-ISCGAVTSDLSPCLTYLTGGPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSI--TKLNTNNAAALPGKCGVDIPYKISTSTNCNTVK 117          
BLAST of CX295384 vs. ExPASy Swiss-Prot
Match: NLTP_PYRCO (Non-specific lipid-transfer protein OS=Pyrus communis PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.770e-21
Identity = 49/111 (44.14%), Postives = 69/111 (62.16%), Query Frame = 1
Query:   37 ILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 369
            ++V +C+     VS    +TC  V  +L+PCI+YV  GGAV   CCNG++T+   A++T DRQ  C CLK     +S      G A  LPGKCG+N+PY+IS ST+C+ V+
Sbjct:   11 LVVALCMA----VSVAHAITCSQVSANLAPCINYVRSGGAVPPACCNGIKTINGLAKTTPDRQAACNCLKNLAGSVS--GVNPGNAESLPGKCGVNVPYKISTSTNCATVK 115          
BLAST of CX295384 vs. ExPASy Swiss-Prot
Match: NLTP2_ORYSI (Non-specific lipid-transfer protein 2 OS=Oryza sativa subsp. indica GN=LTP2-A PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.770e-21
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   40 LVLVCLMGSAFV-----STKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 366
            LVLV L+ +A +     +T A ++C  V + +SPC+SY   G   +  CC+GVR+L +AA +TADR+T C CLK     IS      G AA +P KCG++IPY ISPS DCS V
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSIS--GLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CX295384 vs. ExPASy Swiss-Prot
Match: NLT2A_ORYSJ (Non-specific lipid-transfer protein 2A OS=Oryza sativa subsp. japonica GN=LTP2-A PE=3 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 3.770e-21
Identity = 53/114 (46.49%), Postives = 71/114 (62.28%), Query Frame = 1
Query:   40 LVLVCLMGSAFV-----STKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 366
            LVLV L+ +A +     +T A ++C  V + +SPC+SY   G   +  CC+GVR+L +AA +TADR+T C CLK     IS      G AA +P KCG++IPY ISPS DCS V
Sbjct:    6 LVLVALVAAALLLAGPHTTMAAISCGQVNSAVSPCLSYARGGSGPSAACCSGVRSLNSAASTTADRRTACNCLKNVAGSIS--GLNAGNAASIPSKCGVSIPYTISPSIDCSSV 117          
BLAST of CX295384 vs. ExPASy Swiss-Prot
Match: NLTP2_SOLPN (Non-specific lipid-transfer protein 2 OS=Solanum pennellii GN=LTP2 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.431e-21
Identity = 54/110 (49.09%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   43 VLVCLMGSAFVSTKAQ-VTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 369
            VL+C++    V+  A+ +TC  V + L+PC+ Y+   G +   CC GV+ L   A++T DRQT CTCLK A S  S+T   LG AA LP  C +NIPY+ISPSTDCS+VQ
Sbjct:   11 VLLCMV---VVAPHAEALTCGQVTSTLAPCLPYLMNRGPLG-GCCGGVKGLLGQAQTTVDRQTACTCLKSAAS--SFTGLDLGKAASLPSTCSVNIPYKISPSTDCSKVQ 114          
BLAST of CX295384 vs. ExPASy Swiss-Prot
Match: NLTP2_SORBI (Non-specific lipid-transfer protein 2 OS=Sorghum bicolor GN=LTP2 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 8.399e-21
Identity = 50/101 (49.50%), Postives = 66/101 (65.35%), Query Frame = 1
Query:   67 AFVSTKAQVTCRTVVNDLSPCISYV-SYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRV 366
            A  +++A VTC  V + + PC+SY    G   +  CC+GVR+L +AAR+TADR+  C CLK A  GI      +G AA +P KCG++IPY IS STDCSRV
Sbjct:   23 AATTSEAAVTCGQVSSAIGPCLSYARGQGSGPSAGCCSGVRSLNSAARTTADRRAACNCLKNAARGI--RGLNVGKAASIPSKCGVSIPYTISTSTDCSRV 121          
BLAST of CX295384 vs. ExPASy Swiss-Prot
Match: NLTP3_BRANA (Non-specific lipid-transfer protein 3 OS=Brassica napus GN=LTP3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.097e-20
Identity = 50/116 (43.10%), Postives = 73/116 (62.93%), Query Frame = 1
Query:   22 LVTGCILVLVCLMGSAFVSTKAQVTCRTVVNDLSPCISYVSYGGAVTTNCCNGVRTLYNAARSTADRQTVCTCLKQAVSGISYTRYQLGLAAGLPGKCGLNIPYQISPSTDCSRVQ 369
            LV    LVL C++ +  ++T A ++C TV  +L+ CI Y++  G V T CC+GV +L N AR+T DRQ  C CL  A + +      +  AAGLP  CG+NIPY+IS +T+C+ V+
Sbjct:    4 LVKLSCLVLACMIVAGPIATNAALSCGTVSGNLAACIGYLTQNGPVPTACCSGVTSLNNMARTTPDRQQACRCLVGAANAL--PTINVARAAGLPKACGVNIPYKISKTTNCNSVK 117          
The following BLAST results are available for this feature:
BLAST of CX295384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
NLTP4_ARATH1.692e-2145.37Non-specific lipid-transfer protein 4 OS=Arabidops... [more]
NLTP1_PRUDO1.692e-2153.76Non-specific lipid-transfer protein 1 OS=Prunus do... [more]
SCA_LILLO2.887e-2142.86Stigma/stylar cysteine-rich adhesin OS=Lilium long... [more]
NLTP6_LENCU2.887e-2143.22Non-specific lipid-transfer protein 6 OS=Lens culi... [more]
NLTP_PYRCO3.770e-2144.14Non-specific lipid-transfer protein OS=Pyrus commu... [more]
NLTP2_ORYSI3.770e-2146.49Non-specific lipid-transfer protein 2 OS=Oryza sat... [more]
NLT2A_ORYSJ3.770e-2146.49Non-specific lipid-transfer protein 2A OS=Oryza sa... [more]
NLTP2_SOLPN6.431e-2149.09Non-specific lipid-transfer protein 2 OS=Solanum p... [more]
NLTP2_SORBI8.399e-2149.50Non-specific lipid-transfer protein 2 OS=Sorghum b... [more]
NLTP3_BRANA1.097e-2043.10Non-specific lipid-transfer protein 3 OS=Brassica ... [more]

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Properties
Property NameValue
Genbank descriptionC05071F06SK PhIFruit1 Citrus clementina cDNA clone C05071F06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295384 ID=CX295384; Name=CX295384; organism=Citrus clementina; type=EST; length=589bp
AGCTCCGTAATGCTGATGAAACTTGTGACAGGCTGCATCTTGGTGCTTGT
TTGCTTGATGGGCAGTGCGTTCGTGTCCACCAAAGCACAAGTAACATGCC
GCACGGTGGTGAATGACTTGTCTCCATGCATATCCTACGTGTCATACGGC
GGGGCCGTGACGACGAACTGTTGCAACGGAGTGAGGACACTCTACAATGC
CGCTCGGTCCACAGCTGACCGTCAGACCGTGTGTACGTGCTTGAAACAAG
CTGTCAGTGGAATCTCGTACACCAGGTACCAGCTCGGACTCGCAGCTGGA
CTTCCCGGCAAATGTGGACTCAACATTCCTTACCAGATCAGCCCTTCTAC
TGACTGCAGCAGGGTGCAGTGAGAATGATGAACTAGTAGCCATCAGTTAT
GACGCTGTGTGCTTGGATAATTAAGCATGGGGTGAGAGAATAAGAGTGCT
GCGCTTCTGTTTGATGGTGTGTTAGTGTTAAATAGAAGTTGTTAGCGTCA
TCTGGTGGGATTTATGTTGTCTCATGTTTTGTTAGGTTCTGTCCCAACCA
TAAGTACTAAAGAATAAGATTTTGTAAGTTACGTTTAAA
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