CX295388

Overview
NameCX295388
Unique NameCX295388
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length609
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295388 vs. ExPASy Swiss-Prot
Match: CYC_CAMDR (Cytochrome c OS=Camelus dromedarius GN=CYCS PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 8.377e-35
Identity = 66/102 (64.71%), Postives = 82/102 (80.39%), Query Frame = 2
Query:   71 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 376
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E+TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAVGFSYTDANKNKGITWGEETLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CX295388 vs. ExPASy Swiss-Prot
Match: CYC_RAT (Cytochrome c, somatic OS=Rattus norvegicus GN=Cycs PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.094e-34
Identity = 66/102 (64.71%), Postives = 81/102 (79.41%), Query Frame = 2
Query:   71 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 376
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CX295388 vs. ExPASy Swiss-Prot
Match: CYC_MOUSE (Cytochrome c, somatic OS=Mus musculus GN=Cycs PE=1 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.094e-34
Identity = 66/102 (64.71%), Postives = 81/102 (79.41%), Query Frame = 2
Query:   71 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 376
            G+ + G+KIF  KCAQCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK++T
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKGGKHKTGPNLHGLFGRKTGQAAGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKKAT 103          
BLAST of CX295388 vs. ExPASy Swiss-Prot
Match: CYC_VARVA (Cytochrome c OS=Varanus varius PE=1 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.429e-34
Identity = 65/103 (63.11%), Postives = 82/103 (79.61%), Query Frame = 2
Query:   71 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 379
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+ LFGR++G   G+SY+AANKN  + W E TL++YL NPKKYIPGTKM+F G+KK  +R DLIAYLK++TA
Sbjct:    2 GDVEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHQLFGRKTGEAEGFSYTAANKNKGITWGEDTLFEYLENPKKYIPGTKMIFAGIKKKTERDDLIAYLKEATA 104          
BLAST of CX295388 vs. ExPASy Swiss-Prot
Match: CYC_EMENI (Cytochrome c OS=Emericella nidulans GN=cycA PE=2 SV=3)

HSP 1 Score: 145.976 bits (367), Expect = 1.429e-34
Identity = 65/108 (60.19%), Postives = 82/108 (75.93%), Query Frame = 2
Query:   56 DEAPPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 379
            D   PG++  G K+F+T+C QCHTVE G GHK GPNL+GLFGR++G   GY+Y+ ANK   V W+E +L+ YL NPKK+IPGTKM F GLKK ++R DLI YLK+STA
Sbjct:    6 DSYSPGDSTKGAKLFETRCKQCHTVENGGGHKVGPNLHGLFGRKTGQAEGYAYTDANKQADVTWDENSLFKYLENPKKFIPGTKMAFGGLKKTKERNDLITYLKESTA 113          
BLAST of CX295388 vs. ExPASy Swiss-Prot
Match: CYC_ASPNG (Cytochrome c OS=Aspergillus niger GN=cycA PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.429e-34
Identity = 65/104 (62.50%), Postives = 82/104 (78.85%), Query Frame = 2
Query:   68 PGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 379
            PG++  G K+F+T+CAQCHTVE G  HK GPNL+GLFGR++G + GY+Y+ ANK   V W+E TL+ YL NPKK+IPGTKM F GLKK ++R DLI YLK+STA
Sbjct:    8 PGDSAKGAKLFQTRCAQCHTVEAGGPHKVGPNLHGLFGRKTGQSEGYAYTDANKQAGVTWDENTLFSYLENPKKFIPGTKMAFGGLKKGKERNDLITYLKESTA 111          
BLAST of CX295388 vs. ExPASy Swiss-Prot
Match: CYC_STRCA (Cytochrome c OS=Struthio camelus GN=CYC PE=1 SV=2)

HSP 1 Score: 145.591 bits (366), Expect = 1.866e-34
Identity = 65/103 (63.11%), Postives = 81/103 (78.64%), Query Frame = 2
Query:   71 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 379
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+GLFGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLDGLFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
BLAST of CX295388 vs. ExPASy Swiss-Prot
Match: CYC_HAEIR (Cytochrome c OS=Haematobia irritans PE=1 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.437e-34
Identity = 63/104 (60.58%), Postives = 81/104 (77.88%), Query Frame = 2
Query:   65 PPGNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 376
            P G+ + G+KIF  +CAQCHTVE G  HK GPNL+GLFGR++G   G++Y+ ANK   + W++ TL++YL NPKKYIPGTKM+F GLKKP +R DLIAYLK +T
Sbjct:    4 PAGDVEKGKKIFVQRCAQCHTVEAGGKHKVGPNLHGLFGRKTGQAAGFAYTNANKAKGITWQDDTLFEYLENPKKYIPGTKMIFAGLKKPNERGDLIAYLKSAT 107          
BLAST of CX295388 vs. ExPASy Swiss-Prot
Match: CYC1_XENTR (Cytochrome c, somatic OS=Xenopus tropicalis GN=cycs PE=3 SV=3)

HSP 1 Score: 145.206 bits (365), Expect = 2.437e-34
Identity = 66/103 (64.08%), Postives = 82/103 (79.61%), Query Frame = 2
Query:   71 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 379
            G+ + G+KIF  KCAQCHTVEK   HK GPNL GLFGR++G  PG+SY+ ANK+  + W E TL++YL NPKKYIPGTKM+F G+KK  +RADLIAYLK+ST+
Sbjct:    2 GDVEKGKKIFVQKCAQCHTVEKTGKHKTGPNLWGLFGRKTGQAPGFSYTDANKSKGIVWGEDTLFEYLENPKKYIPGTKMIFAGIKKKNERADLIAYLKKSTS 104          
BLAST of CX295388 vs. ExPASy Swiss-Prot
Match: CYC_APTPA (Cytochrome c OS=Aptenodytes patagonicus GN=CYC PE=1 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 3.183e-34
Identity = 64/103 (62.14%), Postives = 81/103 (78.64%), Query Frame = 2
Query:   71 GNAKAGEKIFKTKCAQCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 379
            G+ + G+KIF  KC+QCHTVEKG  HK GPNL+G+FGR++G   G+SY+ ANKN  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:    2 GDIEKGKKIFVQKCSQCHTVEKGGKHKTGPNLHGIFGRKTGQAEGFSYTDANKNKGITWGEDTLMEYLENPKKYIPGTKMIFAGIKKKSERADLIAYLKDATS 104          
The following BLAST results are available for this feature:
BLAST of CX295388 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 174
Match NameE-valueIdentityDescription
CYC_CAMDR8.377e-3564.71Cytochrome c OS=Camelus dromedarius GN=CYCS PE=1 S... [more]
CYC_RAT1.094e-3464.71Cytochrome c, somatic OS=Rattus norvegicus GN=Cycs... [more]
CYC_MOUSE1.094e-3464.71Cytochrome c, somatic OS=Mus musculus GN=Cycs PE=1... [more]
CYC_VARVA1.429e-3463.11Cytochrome c OS=Varanus varius PE=1 SV=2[more]
CYC_EMENI1.429e-3460.19Cytochrome c OS=Emericella nidulans GN=cycA PE=2 S... [more]
CYC_ASPNG1.429e-3462.50Cytochrome c OS=Aspergillus niger GN=cycA PE=1 SV=... [more]
CYC_STRCA1.866e-3463.11Cytochrome c OS=Struthio camelus GN=CYC PE=1 SV=2[more]
CYC_HAEIR2.437e-3460.58Cytochrome c OS=Haematobia irritans PE=1 SV=2[more]
CYC1_XENTR2.437e-3464.08Cytochrome c, somatic OS=Xenopus tropicalis GN=cyc... [more]
CYC_APTPA3.183e-3462.14Cytochrome c OS=Aptenodytes patagonicus GN=CYC PE=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05071F10SK PhIFruit1 Citrus clementina cDNA clone C05071F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295388 ID=CX295388; Name=CX295388; organism=Citrus clementina; type=EST; length=609bp
CTGCGTCTTCTTTCTCTCTTTGGATCTTTCAAACACCACAATAATGGCGT
CGTTTGATGAGGCACCTCCCGGCAATGCAAAGGCCGGAGAGAAGATCTTC
AAGACCAAGTGCGCTCAGTGCCACACCGTCGAGAAAGGCGCCGGTCACAA
ACAAGGTCCTAATTTGAACGGATTGTTTGGAAGGCAATCGGGGACTACAC
CTGGGTACTCATACTCTGCGGCTAACAAGAACATGGCTGTGAATTGGGAG
GAAAAGACTTTGTATGATTACTTGCTCAACCCTAAGAAGTACATTCCTGG
AACAAAGATGGTATTCCCTGGATTGAAGAAGCCTCAGGATCGTGCTGACC
TTATTGCATATTTGAAACAATCTACTGCATAAGAACTTGCCGATAGTCAG
TTTACCTATTCCATTTTGCAGTTGTTGAAGATTGTTTTGCGGTGCGGATA
TAGTACTGTTTTTTACCAATAAATTTTAAACATTTAAGGTTCAGCAATGT
TCTTTGTAACTTGACCATTGCTAATTTGAGAAAAGGTTGCTGTCATTGGC
AAACATAATATTCAATTGAATTTCCTGGTTAAAAAAAAAAAAAAAAACTC
GAGGGGGGG
back to top