CX295421

Overview
NameCX295421
Unique NameCX295421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: FTSH7_ORYSJ (Cell division protease ftsH homolog 7, chloroplastic OS=Oryza sativa subsp. japonica GN=FTSH7 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.602e-18
Identity = 59/140 (42.14%), Postives = 78/140 (55.71%), Query Frame = 3
Query:   21 EEIDAVGTKR---YDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSR--MTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            +EIDAV   R   Y   S  ERE  +T+ +LL ++DGFD+   V V+ ATNR + LDPAL RPGR DR +    PD   R  I ++H SR  + L  DV+L +       F+GAD+  +  EA LLA R  +  V   DF
Sbjct:  445 DEIDAVAKSRDGRYRIVSNDERE--QTLNQLLTEMDGFDTNSAVIVLGATNRADVLDPALRRPGRFDRVVMVEAPDRFGRESILKVHVSRKELPLGKDVDLSDIAAMTTGFTGADLANLVNEAALLAGRSNKEIVEKIDF 582          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: TBP7_YEAST (TAT-binding homolog 7 OS=Saccharomyces cerevisiae GN=YTA7 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.093e-18
Identity = 50/125 (40.00%), Postives = 75/125 (60.00%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVN-LEEFVMTKDEFSGADIKAICTEAGLLALR 392
            +EID +   R          I  T+L L+   DG D+RG V VI ATNR +++DPAL RPGR DR+  FPLPD+K R +I QI T + +     N +++       + GAD++++CTEA L++++
Sbjct:  518 DEIDGLAPVRSSKQEQIHASIVSTLLALM---DGMDNRGQVIVIGATNRPDAVDPALRRPGRFDREFYFPLPDVKARFKILQIQTRKWSSPLSTNFIDKLAFLTKGYGGADLRSLCTEAALISIQ 639          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: FTSH5_ORYSJ (Cell division protease ftsH homolog 5, mitochondrial OS=Oryza sativa subsp. japonica GN=FTSH5 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.093e-18
Identity = 56/139 (40.29%), Postives = 79/139 (56.83%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            C I  +EIDA+G  R   +   ++ ++ T+ +LL +LDGF     + VI ATN  ESLD AL+RPGR DR I  P PD++ RR+I + H S++  +DDV+L         FSGAD+  +   A L A  +    VT  D
Sbjct:  324 CIIFMDEIDAIGGSR---NPKDQQYMKMTLNQLLVELDGFKQNEGIIVIAATNFPESLDKALVRPGRFDRHIVVPNPDVEGRRQILESHMSKVLKSDDVDLMIIARGTPGFSGADLANLVNVAALKAAMDGAKAVTMND 459          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: SPG7_HUMAN (Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.733e-18
Identity = 56/143 (39.16%), Postives = 80/143 (55.94%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIH--TSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTDF 425
            C +  +EIDAVG KR    SG    E ++T+ +LL ++DG  +   V V+ +TNR + LD AL+RPGR+DR +   LP ++ RR IF+ H  + ++T +     +        FSGADI  IC EA L A RE    V   +F
Sbjct:  403 CIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHTLNF 545          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: SPG7_MOUSE (Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.570e-18
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYDAHSG-GEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTS--RMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHT 419
            C +  +EIDAVG KR  + SG    E ++T+ +LL ++DG  +   V V+ +TNR + LD AL+RPGR+DR +   LP ++ RR IF+ H    ++T       +        FSGADI  IC EA L A RE    V HT
Sbjct:  403 CIVYIDEIDAVGKKRSTSMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADVLDNALMRPGRLDRHVFIDLPTLQERREIFEQHLKGLKLTQPSSFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSV-HT 542          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: SEC18_CANAL (Vesicular-fusion protein SEC18 OS=Candida albicans GN=SEC18 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMT----LADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER---------------RMKVTHTDF 425
            +E+D+V  +R    S G       + +LL+++DG D   ++ VI  TNR++ +D ALLRPGR + +IE  LPD K R+ IF IHT ++T    L+ DVN +E       F+GA+I+ +C  A   A+                  +MK+T  DF
Sbjct:  385 DELDSVFKQRGSGKSDGTGVGDNVVNQLLSKMDGVDQLNNILVIGMTNRLDLIDTALLRPGRFEIQIEISLPDEKGRKDIFLIHTKKLTENGILSSDVNFDELSTLTKNFTGAEIEGLCNSAKSYAISRHTKKGALAQIDPESIAKMKITRDDF 538          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: FTSH_RICTY (Cell division protease ftsH homolog OS=Rickettsia typhi GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            C I  +EIDAVG  R     GG  E ++T+ ++L ++DGF++   V +I ATNR + LD ALLRPGR DR+I    PDI  R +I ++H  ++     V           FSGA++  +  EA L+A R  + +V   D
Sbjct:  249 CIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHD 387          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: FTSH_RICPR (Cell division protease ftsH homolog OS=Rickettsia prowazekii GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            C I  +EIDAVG  R     GG  E ++T+ ++L ++DGF++   V +I ATNR + LD ALLRPGR DR+I    PDI  R +I ++H  ++     V           FSGA++  +  EA L+A R  + +V   D
Sbjct:  249 CIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHD 387          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: FTSH_RICFE (Cell division protease ftsH homolog OS=Rickettsia felis GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            C I  +EIDAVG  R     GG  E ++T+ ++L ++DGF++   V +I ATNR + LD ALLRPGR DR+I    PDI  R +I ++H  ++     V           FSGA++  +  EA L+A R  + +V   D
Sbjct:  249 CIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHD 387          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: FTSH_RICCN (Cell division protease ftsH homolog OS=Rickettsia conorii GN=ftsH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 4.662e-18
Identity = 53/139 (38.13%), Postives = 77/139 (55.40%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGFDSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRERRMKVTHTD 422
            C I  +EIDAVG  R     GG  E ++T+ ++L ++DGF++   V +I ATNR + LD ALLRPGR DR+I    PDI  R +I ++H  ++     V           FSGA++  +  EA L+A R  + +V   D
Sbjct:  249 CIIFIDEIDAVGRHRGIGMGGGNDEREQTLNQMLVEMDGFEANEGVVIIAATNRPDVLDRALLRPGRFDRQIAVANPDINGREQILKVHLKKIKYNSTVLARIIARGTPGFSGAELANLVNEAALIAARLGKKEVDMHD 387          
The following BLAST results are available for this feature:
BLAST of CX295421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
FTSH7_ORYSJ1.602e-1842.14Cell division protease ftsH homolog 7, chloroplast... [more]
TBP7_YEAST2.093e-1840.00TAT-binding homolog 7 OS=Saccharomyces cerevisiae ... [more]
FTSH5_ORYSJ2.093e-1840.29Cell division protease ftsH homolog 5, mitochondri... [more]
SPG7_HUMAN2.733e-1839.16Paraplegin OS=Homo sapiens GN=SPG7 PE=1 SV=2[more]
SPG7_MOUSE3.570e-1840.43Paraplegin OS=Mus musculus GN=Spg7 PE=1 SV=1[more]
SEC18_CANAL4.662e-1835.06Vesicular-fusion protein SEC18 OS=Candida albicans... [more]
FTSH_RICTY4.662e-1838.13Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICPR4.662e-1838.13Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICFE4.662e-1838.13Cell division protease ftsH homolog OS=Rickettsia ... [more]
FTSH_RICCN4.662e-1838.13Cell division protease ftsH homolog OS=Rickettsia ... [more]

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Properties
Property NameValue
Genbank descriptionC05072A08SK PhIFruit1 Citrus clementina cDNA clone C05072A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295421 ID=CX295421; Name=CX295421; organism=Citrus clementina; type=EST; length=645bp
GCTCGTGCCGAATTCGGCACGAGGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GTTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCCGATATCAAGACTAG
GAGACGTATTTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTTA
CTGTTCTGCATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCTTCTTTTGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAGCCGCTTTGG
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