CX295421

Overview
NameCX295421
Unique NameCX295421
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length645
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PEX6_YARLI (Peroxisomal biogenesis factor 6 OS=Yarrowia lipolytica GN=PEX6 PE=3 SV=2)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 49/133 (36.84%), Postives = 76/133 (57.14%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGFDSRGD--VKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRR-IFQIHTSRMTLADDVNLEEF-VMTKDEFSGADIKAICTEAGLLAL 389
            C +  +E+D+V  +R +   SGG  +  R + +LL +LDG  + G   V V+ ATNR + LD ALLRPGR D+ +   + D   +++ I +  T +  LA DV+LE         F+GAD  A+C++A L A+
Sbjct:  813 CVVFFDELDSVAPQRGNQGDSGGVMD--RIVSQLLAELDGMSTAGGEGVFVVGATNRPDLLDEALLRPGRFDKMLYLGISDTHEKQQTIMEALTRKFRLAADVSLEAISKRCPFTFTGADFYALCSDAMLNAM 943          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: PEX6_PENCH (Peroxisomal biogenesis factor 6 OS=Penicillium chrysogenum GN=pex6 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 51/145 (35.17%), Postives = 81/145 (55.86%), Query Frame = 3
Query:    6 CRIRHEEIDAVGTKRYD-AHSGGEREIQRTMLELLNQLDGF----DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDI-KTRRRIFQIHTSRMTLADDVNL----EEFVMTKDEFSGADIKAICTEAGLLALRERRMKV 410
            C +  +E+D+V  KR +   SGG  +  R + +LL +LDG     ++ G V VI ATNR + LD ALLRPGR D+ +   + D  + +  I +  T +  L  DV+L    E+  +T   ++GAD+ A+C++A L A+  +   V
Sbjct: 1124 CVVFFDELDSVAPKRGNQGDSGGVMD--RIVSQLLAELDGMNGGEENSGGVFVIGATNRPDLLDTALLRPGRFDKMLYLGVSDTHRKQATILEALTRKFALHPDVSLDRVAEQLPLT---YTGADLYALCSDAMLKAITRKATAV 1263          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: KATL1_PAPAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Papio anubis GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 398
            +EID++ ++R    S      +R   ELL Q+DG        D    V V+ ATN    +D AL R  R++++I  PLP  K R  + +I+   + L  D+ LE+     + +SGADI  +C +A L+A+R R
Sbjct:  307 DEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRR 435          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: KATL1_OTOGA (Katanin p60 ATPase-containing subunit A-like 1 OS=Otolemur garnettii GN=KATNAL1 PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 398
            +EID++ ++R    S      +R   ELL Q+DG        D    V V+ ATN    +D AL R  R++++I  PLP  K R  + +I+   + L  D+ LE+     + +SGADI  +C +A L+A+R R
Sbjct:  307 DEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRR 435          
BLAST of CX295421 vs. ExPASy Swiss-Prot
Match: KATL1_HUMAN (Katanin p60 ATPase-containing subunit A-like 1 OS=Homo sapiens GN=KATNAL1 PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.416e-11
Identity = 45/133 (33.83%), Postives = 70/133 (52.63%), Query Frame = 3
Query:   21 EEIDAVGTKRYDAHSGGEREIQRTMLELLNQLDGF-------DSRGDVKVILATNRIESLDPALLRPGRIDRKIEFPLPDIKTRRRIFQIHTSRMTLADDVNLEEFVMTKDEFSGADIKAICTEAGLLALRER 398
            +EID++ ++R    S      +R   ELL Q+DG        D    V V+ ATN    +D AL R  R++++I  PLP  K R  + +I+   + L  D+ LE+     + +SGADI  +C +A L+A+R R
Sbjct:  307 DEIDSICSRR--GTSDEHEASRRVKSELLIQMDGVGGALENDDPSKMVMVLAATNFPWDIDEALRR--RLEKRIYIPLPTAKGRAELLKINLREVELDPDIQLEDIAEKIEGYSGADITNVCRDASLMAMRRR 435          
The following BLAST results are available for this feature:
BLAST of CX295421 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 295
Match NameE-valueIdentityDescription
PEX6_YARLI9.416e-1136.84Peroxisomal biogenesis factor 6 OS=Yarrowia lipoly... [more]
PEX6_PENCH9.416e-1135.17Peroxisomal biogenesis factor 6 OS=Penicillium chr... [more]
KATL1_PAPAN9.416e-1133.83Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_OTOGA9.416e-1133.83Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]
KATL1_HUMAN9.416e-1133.83Katanin p60 ATPase-containing subunit A-like 1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC05072A08SK PhIFruit1 Citrus clementina cDNA clone C05072A08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295421 ID=CX295421; Name=CX295421; organism=Citrus clementina; type=EST; length=645bp
GCTCGTGCCGAATTCGGCACGAGGAAATTGATGCAGTTGGTACGAAGAGG
TATGATGCCCACTCAGGTGGCGAACGTGAAATTCAGAGAACCATGTTGGA
GTTGCTGAACCAGTTGGATGGGTTTGATTCTAGAGGAGATGTCAAAGTAA
TTCTTGCAACCAACCGAATTGAAAGCCTGGATCCAGCTTTACTTCGGCCA
GGTCGAATAGATAGAAAGATTGAATTTCCTCTTCCCGATATCAAGACTAG
GAGACGTATTTTCCAGATTCACACATCAAGGATGACCTTGGCTGATGATG
TCAACTTGGAAGAGTTTGTTATGACCAAAGATGAGTTCTCTGGAGCTGAT
ATAAAGGCTATATGTACTGAAGCTGGTTTGCTTGCTTTGAGAGAGCGCCG
CATGAAGGTGACGCATACAGATTTTAAGAAAGCAAAGGAAAAGGTGATGT
TCAAGAAGAAAGAAGGGGTGCCAGAAGGGCTTTATATGTGAAAGACTTTA
CTGTTCTGCATTTTACTGTTTAGTTCATTTTGCTGTATTTCCAAATTCAA
CTGTTAGCACTTTCGAAGCGGCTTCTTTTGGACTTTAAACATTGTTGTTT
ACTGTTGTTTTGTAAGGTCTACATGCAAGTTAGCAGCCGCTTTGG
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