CX295428
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: CIAO1_DICDI (Probable cytosolic iron-sulfur protein assembly protein OS=Dictyostelium discoideum GN=ciao1 PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12 Identity = 49/157 (31.21%), Postives = 73/157 (46.50%), Query Frame = 1 Query: 256 GRDLFGTLKRNPSEQATETSK-AFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNME---NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNF-CLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQ 711 GR L G + S E SK F VSS+ + +V + S G LLA+ DK + +W ME +F+ H I V + PN LA+SS+D T++ W ++ C+ T TGH + + L F+ K D SC + + FW + Sbjct: 81 GRFLAGA-SFDASTSIWEKSKDELEFTHVSSLEGHTYEVKSVAWDSTGTLLATCSRDKSIWIWQMEDDNDFECLSINSGHGQDIKCVLWHPNEELLASSSYDDTIKFWKDIDGDWECINTLTGHESSIWDLAFN-KDGDKLVSCGEDKLVLFWKFDK 235
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: APAF_MOUSE (Apoptotic protease-activating factor 1 OS=Mus musculus GN=Apaf1 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12 Identity = 41/140 (29.29%), Postives = 69/140 (49.29%), Query Frame = 1 Query: 292 SEQATETSKAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQ--LATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNL 705 +++ + KA + ++ I+ +V CC FSSD +A+ DKKV +W+ + T D+H+ + F +S LAT S D +++WD + C T GH N V F P ++L SC + +R W++ Sbjct: 635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNSSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDV 772
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: COPA2_ORYSJ (Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12 Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 1 Query: 379 HFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLS 708 HF + L S G D K+ VWN + + T H I V+F + ++S D+T+RIW+ + C+ TGHN++VM FHPK+ DL S + +R W++S Sbjct: 58 HFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHECPWIVSASDDQTIRIWN-WQSRTCVAVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIS 165
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: COPA1_ARATH (Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12 Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 1 Query: 379 HFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNL 705 HF + L S G D K+ VWN +N + T H I V+F + ++S D+T+RIW+ + C+ TGHN++VM FHPK+ DL S + +R W++ Sbjct: 58 HFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN-WQSRTCVSVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDI 164
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: WD51A_MOUSE (WD repeat-containing protein 51A OS=Mus musculus GN=Wdr51a PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12 Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = 1 Query: 343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQ 711 S+ + + V C FS DG+L+ SA DK V +W+ + + + +H +T V F P+ T +A + D TV++WD A+ + LQ Y H+ V +L FHP N L + +S ++ +L + Sbjct: 140 SLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWD-ARTHRLLQHYQLHSAAVNALSFHPSGNYLI-TASSDSTLKILDLME 260
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11 Identity = 36/123 (29.27%), Postives = 69/123 (56.10%), Query Frame = 1 Query: 358 SSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 726 S+ ++ FS +G+ LAS+ D +++W + + + T H+ I+DV + +S++L ++S DKT+++WD + CL+T GH++ V DF+P N L S + ++ W + C + Sbjct: 39 SAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWD-VRSGKCLKTLKGHSDFVFCCDFNPPSN-LIVSGSFDESVKIWEVKTGKCLK 159
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11 Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 1 Query: 379 HFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNL 705 HF + L S G D K+ VWN + + T H I V+F + + ++S D+T+RIW+ + C+ TGHN++VM FHPK+ DL S + +R W++ Sbjct: 58 HFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWN-WQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDI 164
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11 Identity = 36/123 (29.27%), Postives = 68/123 (55.28%), Query Frame = 1 Query: 358 SSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 726 S+ ++ FS +G+ LAS+ D +++W + + T H+ I+DV + +S++L ++S DKT+++WD + CL+T GH++ V DF+P N L S + ++ W + C + Sbjct: 39 SAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWD-MRSGKCLKTLKGHSDFVFCCDFNPPSN-LIVSGSFDESVKIWEVKTGKCLK 159
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1A_DANRE (Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3) HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11 Identity = 35/127 (27.56%), Postives = 65/127 (51.18%), Query Frame = 1 Query: 343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720 +++ + V F GKLLAS D + +W+ + F+ T H+H ++ V PN + ++S DKT+++W+ A +C++T+TGH V + P ++ L S + +R W ++ C Sbjct: 145 TLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVA-TGYCVKTFTGHREWVRMV--RPNQDGTLIASSSNDQTVRVWVVATKEC 268
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: APAF_RAT (Apoptotic protease-activating factor 1 OS=Rattus norvegicus GN=Apaf1 PE=2 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11 Identity = 39/140 (27.86%), Postives = 69/140 (49.29%), Query Frame = 1 Query: 292 SEQATETSKAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRF--RPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNL 705 +++ + KA + ++ I+ +V CC FSSD +A+ DKKV +W+ + T ++H+ + F + N LAT S D +++WD + C T GH N V F P ++L SC + ++ W++ Sbjct: 635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSVDKKVKIWDSGTGKLVHTYEEHSEQVNCCHFTNKSNHLLLATGSNDSFLKLWDLNQKE-CRNTMFGHTNSVTHCRFSP-DDELLASCSADGTLKLWDV 772 The following BLAST results are available for this feature:
BLAST of CX295428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 56
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295428 ID=CX295428; Name=CX295428; organism=Citrus clementina; type=EST; length=729bpback to top |