CX295428

Overview
NameCX295428
Unique NameCX295428
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length729
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: CIAO1_DICDI (Probable cytosolic iron-sulfur protein assembly protein OS=Dictyostelium discoideum GN=ciao1 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 49/157 (31.21%), Postives = 73/157 (46.50%), Query Frame = 1
Query:  256 GRDLFGTLKRNPSEQATETSK-AFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNME---NFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNF-CLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQ 711
            GR L G    + S    E SK    F  VSS+   + +V    + S G LLA+   DK + +W ME   +F+       H   I  V + PN   LA+SS+D T++ W     ++ C+ T TGH + +  L F+ K  D   SC  +  + FW   +
Sbjct:   81 GRFLAGA-SFDASTSIWEKSKDELEFTHVSSLEGHTYEVKSVAWDSTGTLLATCSRDKSIWIWQMEDDNDFECLSINSGHGQDIKCVLWHPNEELLASSSYDDTIKFWKDIDGDWECINTLTGHESSIWDLAFN-KDGDKLVSCGEDKLVLFWKFDK 235          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: APAF_MOUSE (Apoptotic protease-activating factor 1 OS=Mus musculus GN=Apaf1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.794e-12
Identity = 41/140 (29.29%), Postives = 69/140 (49.29%), Query Frame = 1
Query:  292 SEQATETSKAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQ--LATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNL 705
            +++  +  KA +  ++  I+    +V CC FSSD   +A+   DKKV +W+    +   T D+H+  +    F  +S    LAT S D  +++WD  +   C  T  GH N V    F P  ++L  SC  +  +R W++
Sbjct:  635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNSSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSP-DDELLASCSADGTLRLWDV 772          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: COPA2_ORYSJ (Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 38/110 (34.55%), Postives = 58/110 (52.73%), Query Frame = 1
Query:  379 HFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLS 708
            HF +   L  S G D K+ VWN +  +   T   H   I  V+F      + ++S D+T+RIW+  +   C+   TGHN++VM   FHPK+ DL  S   +  +R W++S
Sbjct:   58 HFHATQPLFVSGGDDYKIKVWNYKTHRCLFTLHGHLDYIRTVQFHHECPWIVSASDDQTIRIWN-WQSRTCVAVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDIS 165          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: COPA1_ARATH (Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.262e-12
Identity = 38/109 (34.86%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  379 HFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNL 705
            HF +   L  S G D K+ VWN +N +   T   H   I  V+F      + ++S D+T+RIW+  +   C+   TGHN++VM   FHPK+ DL  S   +  +R W++
Sbjct:   58 HFHNSQPLFVSGGDDYKIKVWNYKNHRCLFTLLGHLDYIRTVQFHHEYPWIVSASDDQTIRIWN-WQSRTCVSVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDI 164          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: WD51A_MOUSE (WD repeat-containing protein 51A OS=Mus musculus GN=Wdr51a PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 8.178e-12
Identity = 40/123 (32.52%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQ 711
            S+ +  + V C  FS DG+L+ SA  DK V +W+  + +   +  +H   +T V F P+ T +A +  D TV++WD A+ +  LQ Y  H+  V +L FHP  N L  +   +S ++  +L +
Sbjct:  140 SLTQHINWVRCAKFSPDGRLIVSASDDKTVKLWDKTSRECIHSYCEHGGFVTYVDFHPSGTCIAAAGMDNTVKVWD-ARTHRLLQHYQLHSAAVNALSFHPSGNYLI-TASSDSTLKILDLME 260          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: WDR5B_RAT (WD repeat-containing protein 5B OS=Rattus norvegicus GN=Wdr5b PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 36/123 (29.27%), Postives = 69/123 (56.10%), Query Frame = 1
Query:  358 SSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 726
            S+ ++   FS +G+ LAS+  D  +++W   + + + T   H+  I+DV +  +S++L ++S DKT+++WD  +   CL+T  GH++ V   DF+P  N L  S   +  ++ W +    C +
Sbjct:   39 SAAISSVKFSPNGEWLASSAADALIIIWGAYDGKCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKLWD-VRSGKCLKTLKGHSDFVFCCDFNPPSN-LIVSGSFDESVKIWEVKTGKCLK 159          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: COPA2_ARATH (Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  379 HFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNL 705
            HF +   L  S G D K+ VWN +  +   T   H   I  V+F   +  + ++S D+T+RIW+  +   C+   TGHN++VM   FHPK+ DL  S   +  +R W++
Sbjct:   58 HFHNSQPLFVSGGDDYKIKVWNYKTHRCLFTLLGHLDYIRTVQFHHENPWIVSASDDQTIRIWN-WQSRTCISVLTGHNHYVMCASFHPKE-DLVVSASLDQTVRVWDI 164          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: WDR5B_MOUSE (WD repeat-containing protein 5B OS=Mus musculus GN=Wdr5b PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 36/123 (29.27%), Postives = 68/123 (55.28%), Query Frame = 1
Query:  358 SSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNLSQYSCAR 726
            S+ ++   FS +G+ LAS+  D  +++W   +   + T   H+  I+DV +  +S++L ++S DKT+++WD  +   CL+T  GH++ V   DF+P  N L  S   +  ++ W +    C +
Sbjct:   39 SAAISSVKFSPNGEWLASSAADALIIIWGAYDGNCKKTLYGHSLEISDVAWSSDSSRLVSASDDKTLKVWD-MRSGKCLKTLKGHSDFVFCCDFNPPSN-LIVSGSFDESVKIWEVKTGKCLK 159          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: LIS1A_DANRE (Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1b1a PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 35/127 (27.56%), Postives = 65/127 (51.18%), Query Frame = 1
Query:  343 SIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRFRPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKN-DLFCSCDGNSEIRFWNLSQYSC 720
            +++  +  V    F   GKLLAS   D  + +W+ + F+   T   H+H ++ V   PN   + ++S DKT+++W+ A   +C++T+TGH   V  +   P ++  L  S   +  +R W ++   C
Sbjct:  145 TLKGHTDSVQDISFDHTGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVA-TGYCVKTFTGHREWVRMV--RPNQDGTLIASSSNDQTVRVWVVATKEC 268          
BLAST of CX295428 vs. ExPASy Swiss-Prot
Match: APAF_RAT (Apoptotic protease-activating factor 1 OS=Rattus norvegicus GN=Apaf1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 39/140 (27.86%), Postives = 69/140 (49.29%), Query Frame = 1
Query:  292 SEQATETSKAFSFNEVSSIRKSSSKVTCCHFSSDGKLLASAGHDKKVVVWNMENFQTECTPDDHNHIITDVRF--RPNSTQLATSSFDKTVRIWDAAKPNFCLQTYTGHNNHVMSLDFHPKKNDLFCSCDGNSEIRFWNL 705
            +++  +  KA +  ++  I+    +V CC FSSD   +A+   DKKV +W+    +   T ++H+  +    F  + N   LAT S D  +++WD  +   C  T  GH N V    F P  ++L  SC  +  ++ W++
Sbjct:  635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSVDKKVKIWDSGTGKLVHTYEEHSEQVNCCHFTNKSNHLLLATGSNDSFLKLWDLNQKE-CRNTMFGHTNSVTHCRFSP-DDELLASCSADGTLKLWDV 772          
The following BLAST results are available for this feature:
BLAST of CX295428 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
CIAO1_DICDI4.794e-1231.21Probable cytosolic iron-sulfur protein assembly pr... [more]
APAF_MOUSE4.794e-1229.29Apoptotic protease-activating factor 1 OS=Mus musc... [more]
COPA2_ORYSJ6.262e-1234.55Coatomer subunit alpha-2 OS=Oryza sativa subsp. ja... [more]
COPA1_ARATH6.262e-1234.86Coatomer subunit alpha-1 OS=Arabidopsis thaliana G... [more]
WD51A_MOUSE8.178e-1232.52WD repeat-containing protein 51A OS=Mus musculus G... [more]
WDR5B_RAT1.068e-1129.27WD repeat-containing protein 5B OS=Rattus norvegic... [more]
COPA2_ARATH1.068e-1133.94Coatomer subunit alpha-2 OS=Arabidopsis thaliana G... [more]
WDR5B_MOUSE1.395e-1129.27WD repeat-containing protein 5B OS=Mus musculus GN... [more]
LIS1A_DANRE1.395e-1127.56Lissencephaly-1 homolog A OS=Danio rerio GN=pafah1... [more]
APAF_RAT1.395e-1127.86Apoptotic protease-activating factor 1 OS=Rattus n... [more]

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Properties
Property NameValue
Genbank descriptionC05072B03SK PhIFruit1 Citrus clementina cDNA clone C05072B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295428 ID=CX295428; Name=CX295428; organism=Citrus clementina; type=EST; length=729bp
GGGTGGAAACCCGTTGGCCCTTCTCCAAATTCCCAACCATCTACCCCATC
AACTCATACACCTGGTGATGCCGTAGCCATGTCAGGCAGTATGCAGCATG
TTAGTAACGTGCCTAAAGGTTTGATGATGTATGGTTCTGATGGAACAGGT
GGTCATGCATCATCGACAAACCAGCTGGATGACATGGAACATTTTGGAGA
TATTGGCTCCTTAGATGATAATGTGGAATCTTTTCTCTCTCAAGATGATG
GAGATGGAAGGGATCTGTTTGGCACATTGAAACGGAACCCTTCCGAACAA
GCTACTGAAACTTCCAAAGCTTTCTCATTCAACGAAGTTAGTTCAATACG
TAAAAGTAGTAGCAAAGTTACCTGTTGTCATTTCTCTTCAGATGGAAAGT
TATTGGCCAGTGCTGGGCATGACAAGAAGGTTGTTGTTTGGAACATGGAA
AATTTTCAAACTGAATGCACTCCAGATGATCACAATCATATAATTACTGA
TGTTCGCTTCAGACCAAATTCAACTCAGCTAGCAACATCTTCATTTGATA
AGACAGTGCGAATTTGGGATGCTGCTAAACCAAACTTTTGCTTGCAGACT
TATACAGGGCATAACAATCACGTGATGTCCCTTGACTTCCACCCTAAGAA
GAATGACCTTTTCTGCTCATGTGATGGAAACAGTGAGATTCGCTTCTGGA
ATCTAAGTCAGTACTCCTGCGCTCGTATT
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