CX295433

Overview
NameCX295433
Unique NameCX295433
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295433 vs. ExPASy Swiss-Prot
Match: METK_WOLSU (S-adenosylmethionine synthetase OS=Wolinella succinogenes GN=metK PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 54/112 (48.21%), Postives = 79/112 (70.54%), Query Frame = 2
Query:   11 FLWKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 346
            F  KDP+KVDRSGAY  R  AK++VA+G+  +  +Q++YAIGV EP+S+ VD++GTGK+ D ++   V++ F   P  +  +LDL R     + KTA+YGHFGR+ P+F+WE
Sbjct:  263 FSGKDPSKVDRSGAYAARYVAKNLVASGVCDKATIQIAYAIGVVEPVSILVDTHGTGKVEDDQLETCVRQLFRLTPKGIIESLDLLR---PIYKKTASYGHFGRELPEFSWE 371          
BLAST of CX295433 vs. ExPASy Swiss-Prot
Match: METK_STRM5 (S-adenosylmethionine synthetase OS=Stenotrophomonas maltophilia (strain R551-3) GN=metK PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2
Query:   11 FLWKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTW 343
            F  KDP+KVDRS AY  R  AK++VA GLA RC VQVSYAIGV EP S+ V ++GTGKI D +I K++++ FD RP  +   LDL    +  + +TAAYGHFGR   +F++
Sbjct:  265 FSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKISDDKIEKLIRKHFDLRPYGIIKMLDLV---HPMYQQTAAYGHFGRKPKEFSY 372          
BLAST of CX295433 vs. ExPASy Swiss-Prot
Match: METK_SALHS (S-adenosylmethionine synthetase OS=Salmonella heidelberg (strain SL476) GN=metK PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 59/112 (52.68%), Postives = 79/112 (70.54%), Query Frame = 2
Query:   11 FLWKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 346
            F  KDP+KVDRS AY  R  AK+IVA GLA RC +QVSYAIGV EP S+ V+++GT K+P ++++ +V+E FD RP  +   LDL    +  + +TAAYGHFGR+  +F WE
Sbjct:  263 FSGKDPSKVDRSAAYAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPVEQLILLVREFFDLRPYGLIQMLDLL---HPIYKETAAYGHFGRE--NFPWE 369          
BLAST of CX295433 vs. ExPASy Swiss-Prot
Match: METK_PROMA (S-adenosylmethionine synthetase OS=Prochlorococcus marinus GN=metK PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 60/119 (50.42%), Postives = 80/119 (67.23%), Query Frame = 2
Query:   11 FLWKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGN---GRFLK-TAAYGHFGRDDPDFTWEVVK 355
            F  KDPTKVDRS AY  R  AKS+VA GLA R  VQ+SYAIGV  P+S+ V+++G+GK+ ++ + ++V E+FD RPG +     L+   N   GRF +  AAYGHFGR D +  WE V+
Sbjct:  281 FSGKDPTKVDRSAAYAARFVAKSLVAAGLASRVEVQLSYAIGVANPVSILVEAFGSGKMSNEALTELVTENFDLRPGAIIEQFGLRSLPNQRQGRFYRDVAAYGHFGRPDLNLPWEDVQ 399          
BLAST of CX295433 vs. ExPASy Swiss-Prot
Match: METK_NOSP7 (S-adenosylmethionine synthetase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=metK PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 59/116 (50.86%), Postives = 78/116 (67.24%), Query Frame = 2
Query:   11 FLWKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPG--MMTINL-DLKRGGNGRFLK-TAAYGHFGRDDPDFTWE 346
            F  KDPTKVDRS AY  R  AK+IVA GLA +  +Q+SYAIGV  P S+ VD++GTGK+ ++ +L+++ + F+ RP   + T NL +L     GRF +  AAYGHFGR D D  WE
Sbjct:  284 FSGKDPTKVDRSAAYAARYVAKNIVAAGLAEKVEIQLSYAIGVARPTSILVDTFGTGKVDEETLLELINQHFELRPAGIIHTFNLRNLPSERGGRFYQDVAAYGHFGRADLDLPWE 399          
BLAST of CX295433 vs. ExPASy Swiss-Prot
Match: METK_MARAV (S-adenosylmethionine synthetase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=metK PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 61/123 (49.59%), Postives = 80/123 (65.04%), Query Frame = 2
Query:   11 FLWKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFT--WEVVKPLKWEK 373
            F  KDP+KVDRS AY  R  AK+IVA GLA +C +QVSYAIGV +P S+ ++++GTGKI D +I+ +V+  FD RP  +T  LDL    +  +  TAAYGHFGRD  + T   +      WEK
Sbjct:  264 FSGKDPSKVDRSAAYAGRYVAKNIVAAGLAEKCEIQVSYAIGVAQPTSISLNTFGTGKISDDKIIDLVRAHFDLRPYAITNMLDLL---HPMYRATAAYGHFGRDPYEMTVGGKTFTAFPWEK 383          
BLAST of CX295433 vs. ExPASy Swiss-Prot
Match: METK_FINM2 (S-adenosylmethionine synthetase OS=Finegoldia magna (strain ATCC 29328) GN=metK PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 54/112 (48.21%), Postives = 78/112 (69.64%), Query Frame = 2
Query:   11 FLWKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 346
            F  KDPTK DRS AY  R  AK++VA GL  +C V  SYAIGV +P+S+F++++GT KI +++I++ + E+FD RP  +   LDL+R     + + A+YGHFGR+D D +WE
Sbjct:  272 FSGKDPTKTDRSAAYFARYIAKNVVAAGLCDKCEVGFSYAIGVAKPISMFINTFGTNKIEEEKIIQAINENFDARPKAIIDKLDLQR---PIYREVASYGHFGRNDLDLSWE 380          
BLAST of CX295433 vs. ExPASy Swiss-Prot
Match: METK_BACSK (S-adenosylmethionine synthetase OS=Bacillus clausii (strain KSM-K16) GN=metK PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.691e-24
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = 2
Query:   11 FLWKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 346
            F  KD TKVDRSGAY  R  AK+IVA GLA +C VQ++YAIGV +P+S+ V+++GTGK  +  ++++V++ FD RP  +   LDL+R     + +TAAYGHFGR D    WE
Sbjct:  279 FSGKDATKVDRSGAYAARYVAKNIVAAGLADKCEVQLAYAIGVAQPVSIAVNTFGTGKAAEDVLVELVRKHFDLRPAGIIRMLDLRR---PIYKQTAAYGHFGRTDVPLPWE 387          
BLAST of CX295433 vs. ExPASy Swiss-Prot
Match: METK_STRMK (S-adenosylmethionine synthetase OS=Stenotrophomonas maltophilia (strain K279a) GN=metK PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.515e-24
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 2
Query:   11 FLWKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTW 343
            F  KDP+KVDRS AY  R  AK++VA GLA RC VQVSYAIGV EP S+ V ++GTGKI D +I K++++ FD RP  +   LDL    +  + +TAAYGHFGR   +F++
Sbjct:  265 FSGKDPSKVDRSAAYAARYVAKNVVAAGLADRCEVQVSYAIGVAEPTSISVTTFGTGKISDDKIEKLIRKHFDLRPYGIIKMLDLI---HPMYQQTAAYGHFGRKPKEFSY 372          
BLAST of CX295433 vs. ExPASy Swiss-Prot
Match: METK_PSEA6 (S-adenosylmethionine synthetase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=metK PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.515e-24
Identity = 58/112 (51.79%), Postives = 79/112 (70.54%), Query Frame = 2
Query:   11 FLWKDPTKVDRSGAYIVRQAAKSIVANGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKESFDFRPGMMTINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWE 346
            F  KDP+KVDRS AY  R  AK+IVA GLA+RC +Q+SYAIGV EP S+ V+++GTG++ D+ +  +V+E F+ RP  +   LDL+R     +  TAAYGHFGR+  +F WE
Sbjct:  263 FSGKDPSKVDRSAAYAGRYVAKNIVAAGLAKRCEIQISYAIGVAEPTSINVETFGTGQVSDEVLTTLVREHFELRPYGLIKMLDLER---PIYQATAAYGHFGRE--EFPWE 369          
The following BLAST results are available for this feature:
BLAST of CX295433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK_WOLSU2.691e-2448.21S-adenosylmethionine synthetase OS=Wolinella succi... [more]
METK_STRM52.691e-2453.15S-adenosylmethionine synthetase OS=Stenotrophomona... [more]
METK_SALHS2.691e-2452.68S-adenosylmethionine synthetase OS=Salmonella heid... [more]
METK_PROMA2.691e-2450.42S-adenosylmethionine synthetase OS=Prochlorococcus... [more]
METK_NOSP72.691e-2450.86S-adenosylmethionine synthetase OS=Nostoc punctifo... [more]
METK_MARAV2.691e-2449.59S-adenosylmethionine synthetase OS=Marinobacter aq... [more]
METK_FINM22.691e-2448.21S-adenosylmethionine synthetase OS=Finegoldia magn... [more]
METK_BACSK2.691e-2450.89S-adenosylmethionine synthetase OS=Bacillus clausi... [more]
METK_STRMK3.515e-2453.15S-adenosylmethionine synthetase OS=Stenotrophomona... [more]
METK_PSEA63.515e-2451.79S-adenosylmethionine synthetase OS=Pseudoalteromon... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05072B08SK PhIFruit1 Citrus clementina cDNA clone C05072B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295433 ID=CX295433; Name=CX295433; organism=Citrus clementina; type=EST; length=665bp
GAGGCGGTGCTTTCTCTGGAAAGACCCTACTAAGGTGGATAGGAGTGGTG
CATACATTGTTAGGCAGGCTGCTAAGAGCATTGTTGCAAACGGGCTTGCT
CGCAGGTGCATTGTCCAAGTCTCCTATGCCATTGGTGTGCCTGAGCCATT
GTCTGTTTTTGTGGACTCATATGGAACCGGCAAGATTCCTGACAAGGAGA
TCCTCAAAATTGTGAAGGAAAGCTTTGATTTCAGGCCAGGAATGATGACC
ATCAATTTGGATCTCAAAAGGGGCGGTAATGGCAGGTTCTTGAAGACTGC
TGCCTATGGACACTTTGGCAGGGATGACCCAGACTTCACTTGGGAAGTTG
TGAAGCCCCTCAAGTGGGAAAAGCCTCAAGCTTAAATTTGAGTTGAAAAG
TGAAAACTATCCCTGCTGTTCAAGTTTGCTTCTATTGGTAGTGGATGAAT
AATTTGAATATTATCTTGCTGCTGCTTTGTAATACTAAGCAAATCTCCTG
TGTTCAGAACTCATACATGTTCCCCATTCAATTCCTTTCTTTTTCTTCTT
TCCCCACTTCTTTTTTGGTTTTGGTTTAATGTACCATGTCACCACTGTTG
TGTAGTGATATCGATTGAGAATTTTGCTCAACTGGTGCCTGGAATTAGTA
AAATTCTTCCTTTTG
back to top