CX295437

Overview
NameCX295437
Unique NameCX295437
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length551
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_BURMA (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei GN=ppc PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.706e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   27 TTEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            T +    +   H +L+ N   L R I++R PYL+P+N LQVE++KR R  D N +LR  + +TINGIAAG+RNTG
Sbjct:  921 TADALAEITGAHARLAANPL-LARSIKNRFPYLDPLNHLQVELIKRHRAGDTNARLRRGIHLTINGIAAGLRNTG 994          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_BURM9 (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain NCTC 10229) GN=ppc PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.706e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   27 TTEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            T +    +   H +L+ N   L R I++R PYL+P+N LQVE++KR R  D N +LR  + +TINGIAAG+RNTG
Sbjct:  921 TADALAEITGAHARLAANPL-LARSIKNRFPYLDPLNHLQVELIKRHRAGDTNARLRRGIHLTINGIAAGLRNTG 994          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_BURM7 (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain NCTC 10247) GN=ppc PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 4.706e-12
Identity = 36/75 (48.00%), Postives = 50/75 (66.67%), Query Frame = 3
Query:   27 TTEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            T +    +   H +L+ N   L R I++R PYL+P+N LQVE++KR R  D N +LR  + +TINGIAAG+RNTG
Sbjct:  921 TADALAEITGAHARLAANPL-LARSIKNRFPYLDPLNHLQVELIKRHRAGDTNARLRRGIHLTINGIAAGLRNTG 994          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_BURXL (Phosphoenolpyruvate carboxylase OS=Burkholderia xenovorans (strain LB400) GN=ppc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 35/74 (47.30%), Postives = 50/74 (67.57%), Query Frame = 3
Query:   30 TEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            T K +  ++G  +    N  L R I++R PYL+P+N LQVE+LKR R  D N ++R  + ++INGIAAG+RNTG
Sbjct:  921 TSKVLSEITGKSERLAENPLLARSIKNRFPYLDPLNHLQVELLKRHRAGDTNARVRRGIHLSINGIAAGLRNTG 994          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_AZOSE (Phosphoenolpyruvate carboxylase OS=Azoarcus sp. (strain EbN1) GN=ppc PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 32/70 (45.71%), Postives = 52/70 (74.29%), Query Frame = 3
Query:   42 VLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            +L ++G  +L + N  L+R I +R PYL+P+N +QVE+L+R R+  D+ ++R  + I+INGIAAG+RN+G
Sbjct:  847 LLAITGQRELLDGNPLLKRSIRNRFPYLDPLNHVQVELLRRHRETHDDARIRLGIHISINGIAAGLRNSG 916          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_ALCBS (Phosphoenolpyruvate carboxylase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=ppc PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.146e-12
Identity = 35/80 (43.75%), Postives = 51/80 (63.75%), Query Frame = 3
Query:   12 KEGALTTEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            +E    T   +  ++G E L +NN  +R  I  R PY +P+++LQ E++ RLRQ D +  L  AL++TI GIAAG+RNTG
Sbjct:  809 RERLTATVSALSALTGREDLLDNNPVMRWSIRVRDPYTDPLHLLQAELMARLRQQDGDETLESALMVTIAGIAAGLRNTG 888          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_MARMS (Phosphoenolpyruvate carboxylase OS=Marinomonas sp. (strain MWYL1) GN=ppc PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.048e-11
Identity = 31/72 (43.06%), Postives = 55/72 (76.39%), Query Frame = 3
Query:   36 KFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            + V ++   E+L E+N+++R+ I+ R PY++P++ LQ E+L R R+D++N ++  AL+IT+ GIA+GM+NTG
Sbjct:  805 ELVKMLKKQERLIEDNKTIRQSIDVRNPYIDPLHYLQAELLYRSRKDEENAEVNKALMITMAGIASGMQNTG 876          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_STRMU (Phosphoenolpyruvate carboxylase OS=Streptococcus mutans GN=ppc PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.335e-11
Identity = 29/74 (39.19%), Postives = 50/74 (67.57%), Query Frame = 3
Query:   30 TEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            T+  +L +  H++L E+N  L+  ++ RLPY N +N +Q+E++KR R+ +    L + + ITING+A G+RN+G
Sbjct:  834 TKNVILAIESHKQLLEDNSYLKASLDYRLPYFNVLNYIQIELIKRQRRGELGENLENLIHITINGVATGLRNSG 907          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_NEIMF (Phosphoenolpyruvate carboxylase OS=Neisseria meningitidis serogroup C / serotype 2a (strain ATCC 700532 / FAM18) GN=ppc PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.050e-11
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 3
Query:    3 G*AKEGALTTEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            G  KE    + K +L +   E+L  +NRSL R +  R+PYLN +N LQV +LKRLR++ DN      + +TING+A G+RNTG
Sbjct:  818 GMIKEEYRRSRKALLDLLQTEELLRDNRSLARSLALRIPYLNALNGLQVAMLKRLRKEPDNPHALLMVHLTINGVAQGLRNTG 900          
BLAST of CX295437 vs. ExPASy Swiss-Prot
Match: CAPP_NEIMB (Phosphoenolpyruvate carboxylase OS=Neisseria meningitidis serogroup B GN=ppc PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.050e-11
Identity = 38/83 (45.78%), Postives = 53/83 (63.86%), Query Frame = 3
Query:    3 G*AKEGALTTEKFVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITINGIAAGMRNTG 251
            G  KE    + K +L +   E+L  +NRSL R +  R+PYLN +N LQV +LKRLR++ DN      + +TING+A G+RNTG
Sbjct:  818 GMIKEEYRRSRKALLDLLQTEELLRDNRSLARSLALRIPYLNALNGLQVAMLKRLRKEPDNPHALLMVHLTINGVAQGLRNTG 900          
The following BLAST results are available for this feature:
BLAST of CX295437 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
CAPP_BURMA4.706e-1248.00Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]
CAPP_BURM94.706e-1248.00Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]
CAPP_BURM74.706e-1248.00Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]
CAPP_BURXL6.146e-1247.30Phosphoenolpyruvate carboxylase OS=Burkholderia xe... [more]
CAPP_AZOSE6.146e-1245.71Phosphoenolpyruvate carboxylase OS=Azoarcus sp. (s... [more]
CAPP_ALCBS6.146e-1243.75Phosphoenolpyruvate carboxylase OS=Alcanivorax bor... [more]
CAPP_MARMS1.048e-1143.06Phosphoenolpyruvate carboxylase OS=Marinomonas sp.... [more]
CAPP_STRMU2.335e-1139.19Phosphoenolpyruvate carboxylase OS=Streptococcus m... [more]
CAPP_NEIMF3.050e-1145.78Phosphoenolpyruvate carboxylase OS=Neisseria menin... [more]
CAPP_NEIMB3.050e-1145.78Phosphoenolpyruvate carboxylase OS=Neisseria menin... [more]

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Properties
Property NameValue
Genbank descriptionC05072B12SK PhIFruit1 Citrus clementina cDNA clone C05072B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295437 ID=CX295437; Name=CX295437; organism=Citrus clementina; type=EST; length=551bp
GAGGCTGAGCTAAGGAGGGAGCTCTTACAACTGAGAAGTTCGTACTTGTG
GTTAGTGGGCATGAGAAGCTATCTGAGAATAACCGCAGTTTGAGGAGGCT
GATTGAGAGCAGACTCCCATATCTCAATCCTATGAATATGTTGCAGGTGG
AGATACTGAAGAGATTGAGACAGGATGATGATAACCATAAACTCAGAGAT
GCATTGCTCATCACTATAAATGGAATAGCTGCTGGTATGAGGAACACAGG
TTAAGTCAATTCGCTAGCTGGTTTAACACAGGTTAAGTTTAAGTGGCTTG
TATGCATATCGGGAAGACAGGTTTAGTAAAATCTCGCTTGTCATCTGCTA
ATGTATGCCGGAAACTACTCCTATTTCTATTTTTGTAATTTTCTTTTTAG
AACTGCGGCTTGATGGTTGAGGTCACAACTAAATGTACTTGACAAAGGCT
GTGTGGAAAAATTTGTGGAAAATTTTCAGTTAGTAGTAAAAAAAAAAAAA
AGAAAAAAAAATTAAGAAAAAAAAAACAAATAAAAAATAAAAAAAAAAAA
A
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