CX295439

Overview
NameCX295439
Unique NameCX295439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3)

HSP 1 Score: 253.832 bits (647), Expect = 6.469e-67
Identity = 116/172 (67.44%), Postives = 142/172 (82.56%), Query Frame = 2
Query:    5 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520
            AGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR    G KGIP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   84 AGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 4.193e-66
Identity = 111/172 (64.53%), Postives = 143/172 (83.14%), Query Frame = 2
Query:    5 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520
            AGFMDV+SI KT ENFRL+YD KGRF +H + +EEAK+KLCKV+ +  G KGIP++ T+D RTIRYPDP+IKANDT+++DLE  KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++D+ G+ FATRL N+F IGKG+K WVS+P+GKGI+L+I EE  KR
Sbjct:   84 AGFMDVISIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 255          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 251.136 bits (640), Expect = 4.193e-66
Identity = 114/172 (66.28%), Postives = 142/172 (82.56%), Query Frame = 2
Query:    5 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520
            AGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +    KGIP++ T+D RTIRYPDPLIK NDT++++LE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   84 AGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3)

HSP 1 Score: 249.98 bits (637), Expect = 9.341e-66
Identity = 115/171 (67.25%), Postives = 140/171 (81.87%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520
            GFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR    G K IP++ T+D RTIRYPDPLIK NDTI++DLE  KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   85 GFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 1.762e-64
Identity = 110/172 (63.95%), Postives = 139/172 (80.81%), Query Frame = 2
Query:    5 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520
            AGFMDV+SI KT E+FRL+YDTKGRF +H +  EEAK+KLCKVR +  G KGIP++ T+D RTIRYPDP+IK NDT+++DL   KIT FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE  KR
Sbjct:   84 AGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2)

HSP 1 Score: 243.432 bits (620), Expect = 8.743e-64
Identity = 110/172 (63.95%), Postives = 141/172 (81.98%), Query Frame = 2
Query:    5 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520
            AG+MDV+++ KT E FRL+YD KGRF +H +  EEAK+KLCKV+  Q G KG+P++ T+DGRTIRYPDPLI AND++++D+   KITD+IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL NVF IGKG+KP++SLPKGKG+KLSI EE  KR
Sbjct:   84 AGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.142e-63
Identity = 116/171 (67.84%), Postives = 136/171 (79.53%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520
            GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:   85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRR 255          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1)

HSP 1 Score: 242.276 bits (617), Expect = 1.948e-63
Identity = 116/171 (67.84%), Postives = 136/171 (79.53%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520
            GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:   85 GFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2)

HSP 1 Score: 242.276 bits (617), Expect = 1.948e-63
Identity = 116/171 (67.84%), Postives = 136/171 (79.53%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520
            GFMDV+S+ KT E+FRL+YD KGRF +H +  EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI  FIKFD    VMVTGGRN GRVG I +RE H GSFE IH++DAL  EFATRL NVF IG+  K W+SLPKGKG+KLSI EE  +R
Sbjct:   85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 2.544e-63
Identity = 110/172 (63.95%), Postives = 138/172 (80.23%), Query Frame = 2
Query:    5 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520
            AGFMDVV+I KT E FRLLYD KGRF LH +  EEAK+KLC+V+ VQ G KG+P++ T+D RTIRYPDPLIK NDT+K+DL   KI D+IKFD GN+ MVTGG N GRVG+I +RE+H GSF+ +H++D+ GH FATRL  +F IGK +KP++SLP+GKGIKLS+ EE  +R
Sbjct:   84 AGFMDVVTIEKTGEFFRLLYDVKGRFTLHRITPEEAKYKLCRVKRVQVGPKGVPFLTTHDARTIRYPDPLIKVNDTVKVDLATGKIDDYIKFDSGNVCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATRLNYIFVIGKSTKPYISLPRGKGIKLSVAEERDRR 255          
The following BLAST results are available for this feature:
BLAST of CX295439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RS4_XENTR6.469e-6767.4440S ribosomal protein S4 OS=Xenopus tropicalis GN=... [more]
RS4_ICTPU4.193e-6664.5340S ribosomal protein S4 OS=Ictalurus punctatus GN... [more]
RS4Y1_MONDO4.193e-6666.2840S ribosomal protein S4, Y isoform 1 OS=Monodelph... [more]
RS4X_MONDO9.341e-6667.2540S ribosomal protein S4, X isoform OS=Monodelphis... [more]
RS4Y1_MACFU1.762e-6463.9540S ribosomal protein S4, Y isoform 1 OS=Macaca fu... [more]
RS4_DROME8.743e-6463.9540S ribosomal protein S4 OS=Drosophila melanogaste... [more]
RS4B_SCHPO1.142e-6367.8440S ribosomal protein S4-B OS=Schizosaccharomyces ... [more]
RS4C_SCHPO1.948e-6367.8440S ribosomal protein S4-C OS=Schizosaccharomyces ... [more]
RS4A_SCHPO1.948e-6367.8440S ribosomal protein S4-A OS=Schizosaccharomyces ... [more]
RS4_IXOSC2.544e-6363.9540S ribosomal protein S4 OS=Ixodes scapularis GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC05072C02SK PhIFruit1 Citrus clementina cDNA clone C05072C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295439 ID=CX295439; Name=CX295439; organism=Citrus clementina; type=EST; length=707bp
GAGGGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACT
TCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGA
GATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGG
CCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCT
ACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAA
GAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCAT
GGTCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAAGAACAGGG
AAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGT
CATGAGTTTGCAACTCGCCTAGGCAATGTGTTCACCATCGGGAAGGGTTC
AAAACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAAGTTGTCCATCA
TTGAGGAAGCTAGGAAGAGACAGGCTGCCCAGGCTGCTGCTTAAGCTTTT
ACAATGAATTTGGATACATTTTGCTGCTTTGTTTTTTCTTGTTGAATTAG
AGCTGATTGGCACTCTCTAAAGCTGAAGTAGGACCGATGCAAAAATGAAT
CTTTATTTTTATTTTTATTTTTATCAGCACAATTTTGAACCTGCTTTGTC
CTTTTTT
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