CX295439
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4_XENTR (40S ribosomal protein S4 OS=Xenopus tropicalis GN=rps4 PE=2 SV=3) HSP 1 Score: 253.832 bits (647), Expect = 6.469e-67 Identity = 116/172 (67.44%), Postives = 142/172 (82.56%), Query Frame = 2 Query: 5 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520 AGFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR G KGIP++ T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE KR Sbjct: 84 AGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTWVGTKGIPHLVTHDARTIRYPDPLIKVNDTIQIDLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4_ICTPU (40S ribosomal protein S4 OS=Ictalurus punctatus GN=rps4 PE=2 SV=3) HSP 1 Score: 251.136 bits (640), Expect = 4.193e-66 Identity = 111/172 (64.53%), Postives = 143/172 (83.14%), Query Frame = 2 Query: 5 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520 AGFMDV+SI KT ENFRL+YD KGRF +H + +EEAK+KLCKV+ + G KGIP++ T+D RTIRYPDP+IKANDT+++DLE KIT+FIKFD GN+ MVTGG N GR+G+I NRE+H GSF+ +H++D+ G+ FATRL N+F IGKG+K WVS+P+GKGI+L+I EE KR Sbjct: 84 AGFMDVISIEKTGENFRLIYDVKGRFTVHRITNEEAKYKLCKVKKILIGTKGIPHLVTHDARTIRYPDPMIKANDTVRIDLETGKITEFIKFDTGNLCMVTGGANLGRIGVITNRERHPGSFDVVHVKDSTGNSFATRLSNIFVIGKGNKAWVSIPRGKGIRLTIAEERDKR 255
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4Y1_MONDO (40S ribosomal protein S4, Y isoform 1 OS=Monodelphis domestica GN=RPS4Y1 PE=2 SV=3) HSP 1 Score: 251.136 bits (640), Expect = 4.193e-66 Identity = 114/172 (66.28%), Postives = 142/172 (82.56%), Query Frame = 2 Query: 5 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520 AGFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR + KGIP++ T+D RTIRYPDPLIK NDT++++LE KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE KR Sbjct: 84 AGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKIFVATKGIPHLVTHDARTIRYPDPLIKVNDTVQINLETGKITDFIKFDTGNLCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4X_MONDO (40S ribosomal protein S4, X isoform OS=Monodelphis domestica GN=RPS4X PE=2 SV=3) HSP 1 Score: 249.98 bits (637), Expect = 9.341e-66 Identity = 115/171 (67.25%), Postives = 140/171 (81.87%), Query Frame = 2 Query: 8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520 GFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR G K IP++ T+D RTIRYPDPLIK NDTI++DLE KITDFIKFD GN+ MVTGG N GR+G+I NREKH GSF+ +H++DA G+ FATRL N+F IGKG+KPW+SLP+GKGI+L+I EE KR Sbjct: 85 GFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKTFVGTKAIPHLVTHDARTIRYPDPLIKMNDTIQIDLETGKITDFIKFDTGNMCMVTGGANLGRIGVITNREKHPGSFDVVHVKDANGNSFATRLSNIFVIGKGNKPWISLPRGKGIRLTIAEERDKR 255
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4Y1_MACFU (40S ribosomal protein S4, Y isoform 1 OS=Macaca fuscata fuscata GN=RPS4Y1 PE=2 SV=3) HSP 1 Score: 245.743 bits (626), Expect = 1.762e-64 Identity = 110/172 (63.95%), Postives = 139/172 (80.81%), Query Frame = 2 Query: 5 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520 AGFMDV+SI KT E+FRL+YDTKGRF +H + EEAK+KLCKVR + G KGIP++ T+D RTIRYPDP+IK NDT+++DL KIT FIKFD GN+ MV GG N GRVG+I NRE+H GSF+ +H++DA G+ FATR+ N+F IG G+KPW+SLP+GKGI+L+I EE KR Sbjct: 84 AGFMDVISIEKTGEHFRLVYDTKGRFAVHRITAEEAKYKLCKVRKITVGTKGIPHLVTHDARTIRYPDPVIKVNDTVRIDLGSGKITSFIKFDTGNVCMVIGGANLGRVGVITNRERHPGSFDVVHVKDASGNSFATRISNIFVIGNGNKPWISLPRGKGIRLTIAEERDKR 255
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4_DROME (40S ribosomal protein S4 OS=Drosophila melanogaster GN=RpS4 PE=2 SV=2) HSP 1 Score: 243.432 bits (620), Expect = 8.743e-64 Identity = 110/172 (63.95%), Postives = 141/172 (81.98%), Query Frame = 2 Query: 5 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520 AG+MDV+++ KT E FRL+YD KGRF +H + EEAK+KLCKV+ Q G KG+P++ T+DGRTIRYPDPLI AND++++D+ KITD+IKFD GN+ M+TGGRN GRVG + NRE+H GSF+ +HI+D+ GH FATRL NVF IGKG+KP++SLPKGKG+KLSI EE KR Sbjct: 84 AGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKKTQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRNLGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKGVKLSIAEERDKR 255
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4B_SCHPO (40S ribosomal protein S4-B OS=Schizosaccharomyces pombe GN=rps4b PE=1 SV=1) HSP 1 Score: 243.047 bits (619), Expect = 1.142e-63 Identity = 116/171 (67.84%), Postives = 136/171 (79.53%), Query Frame = 2 Query: 8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520 GFMDV+S+ KT E+FRL+YD KGRF +H + EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI FIKFD VMVTGGRN GRVG I +RE H GSFE IH++DAL EFATRL NVF IG+ K W+SLPKGKG+KLSI EE +R Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRR 255
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4C_SCHPO (40S ribosomal protein S4-C OS=Schizosaccharomyces pombe GN=rps4c PE=1 SV=1) HSP 1 Score: 242.276 bits (617), Expect = 1.948e-63 Identity = 116/171 (67.84%), Postives = 136/171 (79.53%), Query Frame = 2 Query: 8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520 GFMDV+S+ KT E+FRL+YD KGRF +H + EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI FIKFD VMVTGGRN GRVG I +RE H GSFE IH++DAL EFATRL NVF IG+ K W+SLPKGKG+KLSI EE +R Sbjct: 85 GFMDVISVDKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4A_SCHPO (40S ribosomal protein S4-A OS=Schizosaccharomyces pombe GN=rps4a PE=2 SV=2) HSP 1 Score: 242.276 bits (617), Expect = 1.948e-63 Identity = 116/171 (67.84%), Postives = 136/171 (79.53%), Query Frame = 2 Query: 8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520 GFMDV+S+ KT E+FRL+YD KGRF +H + EEAK+KLCKV+ VQ G KG+P++ T+DGRTIRYPDPLIK NDTIKL+LE NKI FIKFD VMVTGGRN GRVG I +RE H GSFE IH++DAL EFATRL NVF IG+ K W+SLPKGKG+KLSI EE +R Sbjct: 85 GFMDVISVEKTGEHFRLVYDIKGRFTVHRITAEEAKYKLCKVKRVQLGAKGVPFLVTHDGRTIRYPDPLIKVNDTIKLNLETNKIESFIKFDTSAQVMVTGGRNMGRVGTIVHREHHLGSFEIIHVKDALDREFATRLSNVFVIGETGKSWISLPKGKGVKLSITEERDRR 255
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4_IXOSC (40S ribosomal protein S4 OS=Ixodes scapularis GN=RpS4 PE=2 SV=1) HSP 1 Score: 241.891 bits (616), Expect = 2.544e-63 Identity = 110/172 (63.95%), Postives = 138/172 (80.23%), Query Frame = 2 Query: 5 AGFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKGKGIKLSIIEEARKR 520 AGFMDVV+I KT E FRLLYD KGRF LH + EEAK+KLC+V+ VQ G KG+P++ T+D RTIRYPDPLIK NDT+K+DL KI D+IKFD GN+ MVTGG N GRVG+I +RE+H GSF+ +H++D+ GH FATRL +F IGK +KP++SLP+GKGIKLS+ EE +R Sbjct: 84 AGFMDVVTIEKTGEFFRLLYDVKGRFTLHRITPEEAKYKLCRVKRVQVGPKGVPFLTTHDARTIRYPDPLIKVNDTVKVDLATGKIDDYIKFDSGNVCMVTGGHNLGRVGVITSRERHPGSFDIVHVKDSQGHSFATRLNYIFVIGKSTKPYISLPRGKGIKLSVAEERDRR 255 The following BLAST results are available for this feature:
BLAST of CX295439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 79
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295439 ID=CX295439; Name=CX295439; organism=Citrus clementina; type=EST; length=707bpback to top |