CX295439

Overview
NameCX295439
Unique NameCX295439
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4E_AERPE (30S ribosomal protein S4e OS=Aeropyrum pernix GN=rps4e PE=3 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.023e-19
Identity = 60/166 (36.14%), Postives = 91/166 (54.82%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTI--RYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFET-IHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 478
            GFMDV+ +  T E FR+L      F+LH + +EE   K  ++ +    + G   +N +DGR I  R  DP      + +  DT+ + +   +I   IKF  G I ++ GGRN GRVG++K+ +K  G   T + ++DA G+ F T L  VF IG   +P +SLP+G
Sbjct:   86 GFMDVIEVVDTGEKFRMLPYPVKFFKLHPIPEEEGDLKPVRIENKTTVKGGHVQLNLHDGRNILVRVKDPRNPVEDVYRTMDTLLITVPGQEIKGHIKFGEGAIAIIVGGRNVGRVGVVKSVQKGWGRKRTLVTLEDASGNLFQTSLDYVFVIGL-DRPVISLPEG 250          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4E_HYPBU (30S ribosomal protein S4e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps4e PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 58/167 (34.73%), Postives = 88/167 (52.69%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPL-------IKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG-KGSKPWVSLPKG 478
            GFMDV+ I  T E +R+L      F LH +  EEA+FKL ++      + G   ++ +DGR   IR  DP         K   T+K+ + E ++  +   +VG++V++ GGRN GRVG I + +        + I+DA G +  T L  VF I     +PW+SLP+G
Sbjct:   86 GFMDVIEIVDTGEFYRVLPYPTRFFTLHPISKEEAQFKLGRIEDKSTVKGGHIQLHLHDGRNVLIRVSDPTNPVEAKPYKTLGTVKISIPEQQLLGYAPLEVGSLVIIFGGRNVGRVGRIVSIQPGMRRRGIVTIEDARGEKIQTSLEYVFVIAPPNEEPWISLPEG 252          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4E_METST (30S ribosomal protein S4e OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps4e PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 55/154 (35.71%), Postives = 83/154 (53.90%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 469
            GFMDV+SIPK N+ FR+L D KGR  L  + ++++ FKL K+      + G   +N   GR I   D   K  D + L++ E KI+D IKF+ G + ++TGG++   VG I   +  + S     + +     F T    VF +G+  KP +SL
Sbjct:   86 GFMDVISIPKINKTFRVLQDYKGRLVLKEIEEKDSTFKLVKILGKTTIKGGKTQLNLEGGRNI-IADDDYKTGDVLLLNIPEQKISDSIKFEEGALGLITGGKHISEVGKIDEIKITQSSKSNTVLMETEEGSFLTLARYVFVVGQ-DKPVISL 237          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4E_STAMF (30S ribosomal protein S4e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rps4e PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.047e-16
Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG----IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 478
            G MDV+ I  T E +R++        L  +  EEAK+KL ++ +    + G   +N +DGR   I+  DP      + K   T+++ + E +I ++I  D G +V+++GGRN GRVG    I K   +H+     + I+D  G++F T L  VF IGK  +P + LP+G
Sbjct:   86 GLMDVIEIVDTGETYRVIPVPVKVLGLIEIDKEEAKYKLSRIENKTTVKGGHIQLNLHDGRNVLIKVSDPKNPVEDIYKTLGTLQISIPEQQILNYIPLDEGTLVIISGGRNVGRVGKVVSIHKGIRRHR---SIVTIEDKHGNKFQTSLTYVFPIGK-EEPLIKLPEG 250          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4E_METJA (30S ribosomal protein S4e OS=Methanocaldococcus jannaschii GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 51/153 (33.33%), Postives = 81/153 (52.94%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--TIRYPDP------LIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIG 442
            G MDVVS+P  NEN+R+L+D KGR +L     E    KLCK+++    + G   +N +DGR   I+  DP      + K  DT+ + + E +I   I F+VG +  +TGG++ G    I   E+     + + +++  G +F T    VF +G
Sbjct:   86 GLMDVVSLPDANENYRVLFDRKGRIKLKP--TENPDVKLCKIKNKTVIKGGHIQLNLHDGRNIVIKVSDPTKAEEDVYKTGDTLLISIPEQEIKAHIPFEVGKLAYITGGKHVGDFAKIVEIERRGIYPDIVTLENMDGEKFKTVKDYVFVVG 236          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4E_DESK1 (30S ribosomal protein S4e OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps4e PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 57/166 (34.34%), Postives = 86/166 (51.81%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRT--IRYPDPLIKANDT------IKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETI-HIQDALGHEFATRLGNVFTIGKGSKPWVSLPKG 478
            G MDV+ I   N+ +R++        L  +  EEA FKLC++ +    + G   +N +DGR   IR  DP     DT      +KL +   +I D++    G I +V+GGRN GRVG I +  K    + +I  ++D  G++F T L  +F IG   KP + LP+G
Sbjct:   86 GVMDVIEIVGVNKYYRVIPVPTKVLGLIEISREEASFKLCRIENKTTVKNGHIQLNLHDGRNVLIRVNDPRNPVEDTYDTLGVLKLSIPVQQILDYVPLKEGVIAIVSGGRNVGRVGKIVSIHKGMRRYRSIVTLEDKQGNKFQTSLDYIFPIGV-EKPLIKLPEG 250          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4E_METS3 (30S ribosomal protein S4e OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps4e PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 47/155 (30.32%), Postives = 86/155 (55.48%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSF-ETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 469
            GFMD++ IPKT E +R+L D KGR +L+ + + ++K  LCK+ +    + G   +N +DG+ +   +      D I L + +++I +  +   G  V++TGG++ G +G +     ++ S   TI I+++   EF T     F +G+ + P +SL
Sbjct:   86 GFMDIIEIPKTGEVYRVLLDKKGRLQLNKIEENDSK--LCKIVNKSTIKGGKIQVNLHDGKNVIIDENDYNVGDVIDLKVPDHEINEVFELKEGACVLITGGKHTGELGTVSEIIVNESSNPNTIIIENSAKDEFLTLKDYAFVVGEDA-PAISL 237          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4E_ARCFU (30S ribosomal protein S4e OS=Archaeoglobus fulgidus GN=rps4e PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.505e-15
Identity = 50/156 (32.05%), Postives = 83/156 (53.21%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGRTIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGK--GSKPWVSL 469
            G  DVV+IPK  +++R+L+D KGR+    +  E+A  KL K+ +    + G   +N +DG  I   +   K  D+I L + E ++ D +KF+ G +VM+TGG + G +G IK+ +  + S   +   +    +  T    VF +GK    KP + L
Sbjct:   81 GLFDVVTIPKLEKSYRILFDEKGRYIPKEV--EDADLKLYKITNKTLVRGGKVQLNLFDGTNILGSNDY-KTKDSILLRIPEKEVVDHLKFEEGALVMITGGTHAGEIGRIKSYKIVRSSAPNLVTVEGEERDITTIEDYVFVVGKKDSDKPVIDL 233          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4E_PYRKO (30S ribosomal protein S4e OS=Pyrococcus kodakaraensis GN=rps4e PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.802e-15
Identity = 55/160 (34.38%), Postives = 87/160 (54.37%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR----TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVG-IIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSLP 472
            G MDVVSIP+T E++R+L +  G+  LH + +EEAK K  ++ + +  +     +N +DG     ++   D   K + T+ + + E +I   + F+VG  V VT G+N  R G I++ R+   G  + + I+D  G  F T     F IGK  KP +SLP
Sbjct:   86 GIMDVVSIPETGEHYRVLPNRIGKLILHPISEEEAKLKPFRINNKRMVKGAKVQLNLHDGSNHLVSLAEKD-AYKTSYTVIMQVPERQIVKVLPFEVGAYVFVTQGKNVARKGKIVEVRQFPMGWPDVVTIEDENGELFDTLKEYAFVIGK-DKPEISLP 243          
BLAST of CX295439 vs. ExPASy Swiss-Prot
Match: RS4E_META3 (30S ribosomal protein S4e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps4e PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 48/162 (29.63%), Postives = 81/162 (50.00%), Query Frame = 2
Query:    8 GFMDVVSIPKTNENFRLLYDTKGRFRLHSLRDEEAKFKLCKVRSVQFGQKGIPYINTYDGR--------TIRYPDPLIKANDTIKLDLEENKITDFIKFDVGNIVMVTGGRNRGRVGIIKNREKHKGSFETIHIQDALGHEFATRLGNVFTIGKGSKPWVSL 469
            G MDV+S+P  NE+F ++ D KGR +L+ ++D     KLCK+ +    + G   +N +DGR          +  + + K  D + L + E  I   ++F  G +  +TGG++ G    I   EK +   + I ++   G +F T    VF +G   KP +S+
Sbjct:   86 GLMDVISLPDANESFLVVLDEKGRIKLNKIKDNTK--KLCKIENKTVIKGGHIQLNLHDGRNQIVKLADATKAEEDIYKTGDCVILSIPEQSIVGHVQFGEGKLAYITGGKHVGDFAKIIGIEKKQLYPDIITLETENGEQFKTIRDYVFIVG-DDKPVISM 244          
The following BLAST results are available for this feature:
BLAST of CX295439 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 79
Match NameE-valueIdentityDescription
RS4E_AERPE5.023e-1936.1430S ribosomal protein S4e OS=Aeropyrum pernix GN=r... [more]
RS4E_HYPBU3.256e-1834.7330S ribosomal protein S4e OS=Hyperthermus butylicu... [more]
RS4E_METST2.756e-1735.7130S ribosomal protein S4e OS=Methanosphaera stadtm... [more]
RS4E_STAMF3.047e-1633.7330S ribosomal protein S4e OS=Staphylothermus marin... [more]
RS4E_METJA8.866e-1633.3330S ribosomal protein S4e OS=Methanocaldococcus ja... [more]
RS4E_DESK18.866e-1634.3430S ribosomal protein S4e OS=Desulfurococcus kamch... [more]
RS4E_METS33.369e-1530.3230S ribosomal protein S4e OS=Methanobrevibacter sm... [more]
RS4E_ARCFU7.505e-1532.0530S ribosomal protein S4e OS=Archaeoglobus fulgidu... [more]
RS4E_PYRKO9.802e-1534.3830S ribosomal protein S4e OS=Pyrococcus kodakaraen... [more]
RS4E_META38.298e-1429.6330S ribosomal protein S4e OS=Methanococcus aeolicu... [more]

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Properties
Property NameValue
Genbank descriptionC05072C02SK PhIFruit1 Citrus clementina cDNA clone C05072C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295439 ID=CX295439; Name=CX295439; organism=Citrus clementina; type=EST; length=707bp
GAGGGCTGGTTTCATGGATGTTGTGTCAATTCCCAAGACCAACGAGAACT
TCCGTCTCCTTTATGACACCAAGGGTCGCTTCCGTCTCCATTCCCTCAGA
GATGAGGAGGCAAAATTCAAGCTTTGCAAAGTTAGATCAGTCCAGTTTGG
CCAGAAAGGTATCCCATACATCAACACCTATGATGGGCGTACCATCCGCT
ACCCTGACCCACTCATCAAAGCCAATGATACCATCAAACTTGACTTAGAA
GAGAACAAGATCACTGACTTCATCAAGTTTGATGTTGGGAATATTGTCAT
GGTCACTGGGGGTAGAAACAGAGGTCGAGTTGGAATCATCAAGAACAGGG
AAAAGCATAAGGGAAGTTTTGAGACCATCCATATTCAAGATGCCCTTGGT
CATGAGTTTGCAACTCGCCTAGGCAATGTGTTCACCATCGGGAAGGGTTC
AAAACCATGGGTGTCACTTCCTAAGGGCAAGGGTATTAAGTTGTCCATCA
TTGAGGAAGCTAGGAAGAGACAGGCTGCCCAGGCTGCTGCTTAAGCTTTT
ACAATGAATTTGGATACATTTTGCTGCTTTGTTTTTTCTTGTTGAATTAG
AGCTGATTGGCACTCTCTAAAGCTGAAGTAGGACCGATGCAAAAATGAAT
CTTTATTTTTATTTTTATTTTTATCAGCACAATTTTGAACCTGCTTTGTC
CTTTTTT
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