CX295453

Overview
NameCX295453
Unique NameCX295453
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295453 vs. ExPASy Swiss-Prot
Match: MTNK_BACLD (Methylthioribose kinase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=mtnK PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.254e-39
Identity = 90/211 (42.65%), Postives = 128/211 (60.66%), Query Frame = 2
Query:   98 PYVRCIGESWPMTKERAYFEALALKEHGKLCPDHVPEVYHFDRTMSLIGMRYLEPPHI-ILRKGLIAGIKYPLLAEHMSEFMAKTLFYTSLLYRTTTEHKRNVAEFCGNVELCRLTEQVVFSDPYKVSKFNHWTSPY---LDRDAEAVREDNTLKLEVAGLKSMFCERAQALIHGDLHTGSVMV-TPNSTQVIDPEFAFYGPMGFDIGAFV 715
            PY + +GESWP+T +RA  E+ AL    +  P  VP+VY+ D  +++  +  L   H+ I R GLI G  YP L+E + EF+ KT FY+S      T  +R V +F  N +LC +TE +VF+DP+    F+H T+ +   L  +AE +  +  LK+E A LK  F    + LIHGDLHTGS+       T++IDPEFAF+GP+GFDIG F+
Sbjct:   65 PYAKVVGESWPLTLDRARIESSALIRQAEHVPHLVPKVYYSDTELAVTVLEDLS--HLEIARNGLIDGKDYPHLSEDIGEFLGKTHFYSSEYALDPTVKERLVKQFT-NPDLCDITESLVFTDPF----FDHETNDFEEELRDEAEVLWGNEALKIEAAKLKQRFLSAEETLIHGDLHTGSIFAGEDGETKIIDPEFAFFGPIGFDIGQFI 268          

HSP 2 Score: 27.335 bits (59), Expect = 2.254e-39
Identity = 15/32 (46.88%), Postives = 19/32 (59.38%), Query Frame = 1
Query:    1 KEVGDGNLNFVYIVVG--TSGSFVIKQAFLFA 90
            +E+GDGNLN V+ V         VIKQA  +A
Sbjct:   36 REIGDGNLNLVFRVYDKEQQRGLVIKQAVPYA 67          
The following BLAST results are available for this feature:
BLAST of CX295453 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
MTNK_BACLD2.254e-3942.65Methylthioribose kinase OS=Bacillus licheniformis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05072D04SK PhIFruit1 Citrus clementina cDNA clone C05072D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295453 ID=CX295453; Name=CX295453; organism=Citrus clementina; type=EST; length=726bp
AAAGAAGTCGGAGACGGCAACCTTAATTTCGTCTACATCGTTGTCGGCAC
TTCTGGTTCTTTCGTCATCAAGCAGGCTTTTCTGTTCGCAGGCTCTTCCG
TATGTACGTTGCATTGGTGAATCATGGCCCATGACAAAGGAAAGAGCGTA
TTTTGAGGCACTAGCATTGAAAGAGCATGGCAAATTGTGTCCTGACCATG
TTCCCGAAGTCTATCATTTTGACCGTACAATGTCTTTGATTGGTATGCGG
TACCTGGAGCCTCCTCATATTATCCTGAGAAAGGGGTTGATTGCTGGAAT
AAAGTATCCATTACTTGCGGAACACATGTCAGAATTCATGGCAAAGACTC
TTTTCTACACATCTCTTTTATATCGTACCACCACAGAGCACAAACGTAAT
GTTGCTGAATTTTGTGGGAATGTGGAGCTATGCAGGCTCACGGAGCAGGT
TGTTTTCTCGGACCCCTACAAAGTATCTAAGTTTAACCATTGGACTTCTC
CTTATCTTGATCGTGACGCTGAGGCTGTTCGGGAGGATAATACATTAAAG
CTGGAAGTTGCTGGGTTGAAATCCATGTTCTGTGAAAGAGCACAAGCCCT
GATACATGGAGATCTCCACACTGGCTCTGTTATGGTCACTCCTAATTCAA
CTCAGGTTATAGATCCAGAATTTGCATTTTATGGACCAATGGGTTTTGAC
ATTGGAGCTTTTGTTGGAACTTGATT
back to top