CX295460

Overview
NameCX295460
Unique NameCX295460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: RAV2_ARATH (AP2/ERF and B3 domain-containing transcription repressor RAV2 OS=Arabidopsis thaliana GN=RAV2 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.773e-39
Identity = 81/123 (65.85%), Postives = 96/123 (78.05%), Query Frame = 1
Query:  256 GEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNE--KGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDW 618
            G    + D+VL +  +E +F+K VTPSDVGKLNRLVIPKQHAEK+FPL S S    KG+L+NFED NGK WRFRYSYWNSSQSYV+TKGWSRFVK+K L AGDVV+F R  G   + +L+IDW
Sbjct:  171 GSSTTQNDKVLKT--REVLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLPSPSPAVTKGVLINFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTG--LERQLYIDW 289          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y1160_ORYSJ (B3 domain-containing protein Os11g0156000 OS=Oryza sativa subsp. japonica GN=Os11g0156000 PE=2 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.844e-38
Identity = 77/107 (71.96%), Postives = 89/107 (83.18%), Query Frame = 1
Query:  298 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSS-SNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKG-RLFI 612
            EKEHMF+K +TPSDVGKLNRLVIPKQHAE+YFPL +  + +KGL+L+FED  G PWRFRYSYW SSQSYV+TKGWSR+VK+K+LDAGDVV F R  G    G RLFI
Sbjct:   33 EKEHMFEKPLTPSDVGKLNRLVIPKQHAERYFPLGAGDAADKGLILSFEDEAGAPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGSFGVGDRLFI 139          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y3158_ARATH (B3 domain-containing protein At3g11580 OS=Arabidopsis thaliana GN=ARF32 PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 8.273e-38
Identity = 78/118 (66.10%), Postives = 93/118 (78.81%), Query Frame = 1
Query:  298 EKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSN-----------EKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDW 618
            ++E +F+K +TPSDVGKLNRLVIPKQHAEKYFPL++++N           EKG+LL+FED +GK W+FRYSYWNSSQSYV+TKGWSR+VKDK LDAGDVV F R   DL   RLFI W
Sbjct:   24 QRESLFEKSLTPSDVGKLNRLVIPKQHAEKYFPLNNNNNNGGSGDDVATTEKGMLLSFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKDKHLDAGDVVFFQRHRFDL--HRLFIGW 139          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y1934_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0693400 OS=Oryza sativa subsp. japonica GN=Os01g0693400 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 77/109 (70.64%), Postives = 86/109 (78.90%), Query Frame = 1
Query:  301 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSS---NEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLA-KGRLFID 615
            ++H+FDK VTPSDVGKLNRLVIPKQHAEK+FPL   S     KG+LLNFED  GK WRFRYSYWNSSQSYV+TKGWSRFVK+K L AGDVV F+R        G+LFID
Sbjct:  212 RDHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPSAGGESKGVLLNFEDAAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFID 320          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: RAV1_ARATH (AP2/ERF and B3 domain-containing transcription factor RAV1 OS=Arabidopsis thaliana GN=RAV1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.004e-37
Identity = 77/106 (72.64%), Postives = 87/106 (82.08%), Query Frame = 1
Query:  304 EHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSS-NEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDW 618
            E +F+K VTPSDVGKLNRLVIPK HAEK+FPL SS+ + KG+LLNFED NGK WRFRYSYWNSSQSYV+TKGWSRFVK+K L AGDVVSF R  G     +L+I W
Sbjct:  185 EALFEKAVTPSDVGKLNRLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVSFSRSNGQ--DQQLYIGW 288          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y8577_ORYSJ (Putative B3 domain-containing protein Os08g0157700 OS=Oryza sativa subsp. japonica GN=Os08g0157700 PE=3 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 75/112 (66.96%), Postives = 87/112 (77.68%), Query Frame = 1
Query:  283 VLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDW 618
            V+++ E+EHMFDKVVTPSDVGKLNRLV+PKQHAE++FP  ++    G  L FEDR G PWRFRYSYW SSQSYVMTKGWSRFV+  +L AGD VSF R     A GR FID+
Sbjct:   61 VVVAAEREHMFDKVVTPSDVGKLNRLVVPKQHAERFFPAAAA----GTQLCFEDRAGTPWRFRYSYWGSSQSYVMTKGWSRFVRAARLSAGDTVSFSRA----ADGRYFIDY 164          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y5498_ORYSJ (AP2/ERF and B3 domain-containing protein Os05g0549800 OS=Oryza sativa subsp. japonica GN=Os05g0549800 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.943e-35
Identity = 77/126 (61.11%), Postives = 87/126 (69.05%), Query Frame = 1
Query:  292 SLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD------------------SSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFID 615
            S  +EH+FDK VTPSDVGKLNRLVIPKQHAEK+FPL                      + KG+LLNFED  GK W+FRYSYWNSSQSYV+TKGWSRFVK+K L AGD V F+R  G  A  +LFID
Sbjct:  186 SAAREHLFDKTVTPSDVGKLNRLVIPKQHAEKHFPLQLPPPTTTSSVAAAADAAAGGGDCKGVLLNFEDAAGKVWKFRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDAVGFYRAAGKNA--QLFID 309          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: RAVL1_ARATH (AP2/ERF and B3 domain-containing transcription repressor TEM1 OS=Arabidopsis thaliana GN=TEM1 PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.019e-35
Identity = 74/114 (64.91%), Postives = 85/114 (74.56%), Query Frame = 1
Query:  301 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSS--------SNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDW 618
            +E +F+K VTPSDVGKLNRLVIPKQHAEK+FPL +         S  KG+L+N EDR GK WRFRYSYWNSSQSYV+TKGWSRFVK+K L AGDVV F R  G     +L+I W
Sbjct:  191 REVLFEKTVTPSDVGKLNRLVIPKQHAEKHFPLPAMTTAMGMNPSPTKGVLINLEDRTGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTG--PDRQLYIHW 302          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: RAVL4_ARATH (AP2/ERF and B3 domain-containing transcription factor ARF14 OS=Arabidopsis thaliana GN=ARF14 PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.491e-34
Identity = 73/108 (67.59%), Postives = 83/108 (76.85%), Query Frame = 1
Query:  304 EHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNE---KGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFIDW 618
            E +F+K VTPSDVGKLNRLVIPK  AEK+FPL   +N    KG+LLNFED NGK WRFRYSYWNSSQSYV+TKGWSRFVK+K+L AGD++SF R      K   FI W
Sbjct:  180 ELLFEKTVTPSDVGKLNRLVIPKHQAEKHFPLPLGNNNVSVKGMLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKRLCAGDLISFKRSNDQDQK--FFIGW 285          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y1410_ORYSJ (AP2/ERF and B3 domain-containing protein Os01g0141000 OS=Oryza sativa subsp. japonica GN=Os01g0141000 PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.597e-33
Identity = 77/129 (59.69%), Postives = 89/129 (68.99%), Query Frame = 1
Query:  256 GEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPL------DSSS---NEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFID 615
            G G     +   S  +E +F+K VTPSDVGKLNRLV+PKQHAEK+FPL      DS+S     KG+LLNFED  GK WRFRYSYWNSSQSYV+TKGWSRFV++K L AGD + F R      K  LFID
Sbjct:  163 GRGMGARAQPTPSWAREPLFEKAVTPSDVGKLNRLVVPKQHAEKHFPLRRAASSDSASAAATGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRAGDTIVFSRSAYGPDK-LLFID 290          
The following BLAST results are available for this feature:
BLAST of CX295460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
RAV2_ARATH9.773e-3965.85AP2/ERF and B3 domain-containing transcription rep... [more]
Y1160_ORYSJ2.844e-3871.96B3 domain-containing protein Os11g0156000 OS=Oryza... [more]
Y3158_ARATH8.273e-3866.10B3 domain-containing protein At3g11580 OS=Arabidop... [more]
Y1934_ORYSJ1.081e-3770.64AP2/ERF and B3 domain-containing protein Os01g0693... [more]
RAV1_ARATH7.004e-3772.64AP2/ERF and B3 domain-containing transcription fac... [more]
Y8577_ORYSJ2.661e-3666.96Putative B3 domain-containing protein Os08g0157700... [more]
Y5498_ORYSJ2.943e-3561.11AP2/ERF and B3 domain-containing protein Os05g0549... [more]
RAVL1_ARATH5.019e-3564.91AP2/ERF and B3 domain-containing transcription rep... [more]
RAVL4_ARATH2.491e-3467.59AP2/ERF and B3 domain-containing transcription fac... [more]
Y1410_ORYSJ3.597e-3359.69AP2/ERF and B3 domain-containing protein Os01g0141... [more]

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Properties
Property NameValue
Genbank descriptionC05072D11SK PhIFruit1 Citrus clementina cDNA clone C05072D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295460 ID=CX295460; Name=CX295460; organism=Citrus clementina; type=EST; length=711bp
GAGGGGGCCATTCCCTTCAGTCCAGGGCTTAAGAGAGTTCACTGATGACT
ATCTGGTGGTACACAGCTGCTTCCTCTTACCACTCATCATCAAAATTACA
ACAAACAACAACAACCACAAATGGGTTCTTGGCTATTAGGCAAAACAACC
ACAACAACGACAGCCGCCGAATTAGAAGATGTCTCAAACGAAGAAGAAGC
TGCAGCACCAACAGAAGAGCAGGCCATCATCATGCAGGAGACGAAGGATA
TTATTGGAGAAGGAGAAGCAGAAGAAGATCGTGTTCTTATTAGCTTGGAG
AAGGAACACATGTTTGACAAAGTTGTAACACCAAGCGATGTGGGTAAGCT
GAATCGTTTAGTCATTCCAAAGCAACACGCAGAAAAGTACTTCCCATTAG
ACTCTTCCTCGAACGAGAAAGGCCTTCTCTTGAATTTCGAGGATCGAAAT
GGAAAGCCATGGAGGTTCCGCTACTCTTACTGGAACAGCAGCCAAAGCTA
CGTCATGACCAAAGGCTGGAGCCGCTTTGTCAAGGACAAGAAACTTGATG
CCGGTGACGTTGTTTCCTTTCATAGGGGTGTTGGTGATTTGGCTAAAGGT
CGTCTTTTCATTGACTGGAGGAGAAGATCCCATCCTCCTGCTGCTGCTGC
TGCTTCGTTTTCTCGCCACCTGCCATTTTACCGGTCCATTCCTTGGAATC
CTTTGCTGATG
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