CX295460

Overview
NameCX295460
Unique NameCX295460
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length711
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y2641_ORYSJ (B3 domain-containing protein Os02g0764100 OS=Oryza sativa subsp. japonica GN=Os02g0764100 PE=2 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 8.860e-32
Identity = 65/94 (69.15%), Postives = 78/94 (82.98%), Query Frame = 1
Query:  292 SLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLD-SSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSF 570
            S  +E +F+K VTPSDVGKLNRL++PKQHAEK+FPL  +SS+  G+LLNFED  GK WRFRYS WNSSQSYV+TKGWSRFV++K L AGD + F
Sbjct:   10 SWAREPLFEKAVTPSDVGKLNRLLVPKQHAEKHFPLRRTSSDASGVLLNFEDGEGKVWRFRYSCWNSSQSYVLTKGWSRFVREKGLRAGDTIVF 103          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y6078_ORYSJ (B3 domain-containing protein Os06g0107800 OS=Oryza sativa subsp. japonica GN=Os06g0107800 PE=2 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.578e-31
Identity = 70/109 (64.22%), Postives = 83/109 (76.15%), Query Frame = 1
Query:  301 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEK--GLLLNFEDRNG--KPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRGVGDLAKGRLFID 615
            +E+MF+KVVTPSDVGKLNRLV+PK +AEKYFPL  ++     G +L FED  G    WRFRYSYW+SSQSYV+TKGWSR+V+DK+L AGD VSF R     A  RLFID
Sbjct:   33 REYMFEKVVTPSDVGKLNRLVVPKHYAEKYFPLGPAARTSPAGTVLCFEDARGGDSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSFCR-----AGARLFID 136          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y1407_ORYSJ (Putative AP2/ERF and B3 domain-containing protein Os01g0140700 OS=Oryza sativa subsp. japonica GN=Os01g0140700 PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.367e-31
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 1
Query:  301 KEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPL-----DSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHR 576
            +E +F+K VTPSDVGKLNRLV+PKQ AE++FP       S +  KG+LLNFED +GK WRFRYSYWNSSQSYV+TKGWSRFV++K L  GD V+F R
Sbjct:  174 REPLFEKAVTPSDVGKLNRLVVPKQQAERHFPFPLRRHSSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSR 270          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: RAVL2_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g50680 OS=Arabidopsis thaliana GN=At1g50680 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 55/121 (45.45%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  244 KDIIGEGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPL---DSSSNEKGLLLN--------FEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFH 573
            K   GE   E D+     +   +F K +TPSDVGKLNRLVIPK++A KY P    D S  E+G ++         F DR  + W+FRY YW SSQS+V T+GW+ FVK+K L   DV++F+
Sbjct:  137 KQARGEVNQESDKCFSCTQ---LFQKELTPSDVGKLNRLVIPKKYAVKYMPFISADQSEKEEGEIVGSVEDVEVVFYDRAMRQWKFRYCYWKSSQSFVFTRGWNSFVKEKNLKEKDVIAFY 254          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: RAVL3_ARATH (AP2/ERF and B3 domain-containing transcription factor At1g51120 OS=Arabidopsis thaliana GN=At1g51120 PE=2 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.200e-20
Identity = 52/120 (43.33%), Postives = 75/120 (62.50%), Query Frame = 1
Query:  241 TKDIIGEGEA-EEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPL--------DSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFH 573
            +K ++G GE  +E     S  +  +F K +TPSDVGKLNRLVIPK++A KY P         ++S   + + + F DR  + W+FRY YW SSQS+V T+GW+ FVK+K L   D++ F+
Sbjct:  155 SKQVLGGGEGGQESNKCFSCTQ--LFQKELTPSDVGKLNRLVIPKKYAVKYMPFISDDQSEKETSEGVEDVEVVFYDRAMRQWKFRYCYWRSSQSFVFTRGWNGFVKEKNLKEKDIIVFY 272          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y7633_ORYSJ (B3 domain-containing protein Os07g0563300 OS=Oryza sativa subsp. japonica GN=Os07g0563300 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.052e-12
Identity = 37/91 (40.66%), Postives = 61/91 (67.03%), Query Frame = 1
Query:  310 MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYW--NSSQSYVMTKGWSRFVKDKKLDAGDVVSFHR 576
            +F+K+++ SD G++ RLV+PK+ AE YFP  + S  +GL L  +D  GK W F++ +W  N+S+ YV+ +G +  ++  +L AGD V+F R
Sbjct:  452 LFEKMLSASDAGRIGRLVLPKKCAEAYFP--AISQAEGLPLKVQDATGKEWVFQFRFWPNNNSRMYVL-EGVTPCIQSMQLQAGDTVTFSR 539          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: ARFC_ARATH (Auxin response factor 3 OS=Arabidopsis thaliana GN=ARF3 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.571e-12
Identity = 42/108 (38.89%), Postives = 55/108 (50.93%), Query Frame = 1
Query:  259 EGEAEEDRVLISLEKEHMFDKVVTPSDVGKLNRLVIPKQHAEKYFP-LDSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFHRG 579
            +G  E+  VL      HMF K +T SD        +P++ AE  FP LD S       L   D +G  WRFR+ Y    + +++T GWS FV  KKL +GD V F RG
Sbjct:  141 DGGEEDYEVLKRSNTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQPRPSQELLARDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRG 248          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: Y7797_ORYSJ (B3 domain-containing protein Os07g0679700 OS=Oryza sativa subsp. japonica GN=Os07g0679700 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.970e-12
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  310 MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYW--NSSQSYVMTKGWSRFVKDKKLDAGDVVSFHR 576
            +F+KV++ SD G++ RLV+PK  AE YFP    S  +G  L  +D  GK W F++ +W  N+S+ YV+ +G +  ++  +L AGD V+F R
Sbjct:  362 LFEKVLSASDAGRIGRLVLPKACAEAYFP--PISQPEGRPLTIQDAKGKEWHFQFRFWPNNNSRMYVL-EGVTPCIQSLQLQAGDTVTFSR 449          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: VAL2_ARATH (B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 38/91 (41.76%), Postives = 59/91 (64.84%), Query Frame = 1
Query:  310 MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYW--NSSQSYVMTKGWSRFVKDKKLDAGDVVSFHR 576
            +F+KV++ SD G++ RLV+PK  AE YFP    S  +GL L  +D  GK W F++ +W  N+S+ YV+ +G +  ++  +L AGD V+F R
Sbjct:  285 LFEKVLSASDAGRIGRLVLPKACAEAYFP--PISLPEGLPLKIQDIKGKEWVFQFRFWPNNNSRMYVL-EGVTPCIQSMQLQAGDTVTFSR 372          
BLAST of CX295460 vs. ExPASy Swiss-Prot
Match: VAL1_ARATH (B3 domain-containing transcription repressor VAL1 OS=Arabidopsis thaliana GN=VAL1 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.798e-12
Identity = 37/91 (40.66%), Postives = 58/91 (63.74%), Query Frame = 1
Query:  310 MFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSSNEKGLLLNFEDRNGKPWRFRYSYW--NSSQSYVMTKGWSRFVKDKKLDAGDVVSFHR 576
            +F+K ++ SD G++ RLV+PK  AE YFP  S S  +G+ L  +D  G+ W F++ YW  N+S+ YV+ +G +  ++   L AGD V+F R
Sbjct:  294 LFEKTLSASDAGRIGRLVLPKACAEAYFPPISQS--EGIPLKIQDVRGREWTFQFRYWPNNNSRMYVL-EGVTPCIQSMMLQAGDTVTFSR 381          
The following BLAST results are available for this feature:
BLAST of CX295460 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
Y2641_ORYSJ8.860e-3269.15B3 domain-containing protein Os02g0764100 OS=Oryza... [more]
Y6078_ORYSJ2.578e-3164.22B3 domain-containing protein Os06g0107800 OS=Oryza... [more]
Y1407_ORYSJ3.367e-3165.98Putative AP2/ERF and B3 domain-containing protein ... [more]
RAVL2_ARATH1.418e-2145.45AP2/ERF and B3 domain-containing transcription fac... [more]
RAVL3_ARATH1.200e-2043.33AP2/ERF and B3 domain-containing transcription fac... [more]
Y7633_ORYSJ2.052e-1240.66B3 domain-containing protein Os07g0563300 OS=Oryza... [more]
ARFC_ARATH4.571e-1238.89Auxin response factor 3 OS=Arabidopsis thaliana GN... [more]
Y7797_ORYSJ5.970e-1240.66B3 domain-containing protein Os07g0679700 OS=Oryza... [more]
VAL2_ARATH7.798e-1241.76B3 domain-containing transcription repressor VAL2 ... [more]
VAL1_ARATH7.798e-1240.66B3 domain-containing transcription repressor VAL1 ... [more]

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Properties
Property NameValue
Genbank descriptionC05072D11SK PhIFruit1 Citrus clementina cDNA clone C05072D11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295460 ID=CX295460; Name=CX295460; organism=Citrus clementina; type=EST; length=711bp
GAGGGGGCCATTCCCTTCAGTCCAGGGCTTAAGAGAGTTCACTGATGACT
ATCTGGTGGTACACAGCTGCTTCCTCTTACCACTCATCATCAAAATTACA
ACAAACAACAACAACCACAAATGGGTTCTTGGCTATTAGGCAAAACAACC
ACAACAACGACAGCCGCCGAATTAGAAGATGTCTCAAACGAAGAAGAAGC
TGCAGCACCAACAGAAGAGCAGGCCATCATCATGCAGGAGACGAAGGATA
TTATTGGAGAAGGAGAAGCAGAAGAAGATCGTGTTCTTATTAGCTTGGAG
AAGGAACACATGTTTGACAAAGTTGTAACACCAAGCGATGTGGGTAAGCT
GAATCGTTTAGTCATTCCAAAGCAACACGCAGAAAAGTACTTCCCATTAG
ACTCTTCCTCGAACGAGAAAGGCCTTCTCTTGAATTTCGAGGATCGAAAT
GGAAAGCCATGGAGGTTCCGCTACTCTTACTGGAACAGCAGCCAAAGCTA
CGTCATGACCAAAGGCTGGAGCCGCTTTGTCAAGGACAAGAAACTTGATG
CCGGTGACGTTGTTTCCTTTCATAGGGGTGTTGGTGATTTGGCTAAAGGT
CGTCTTTTCATTGACTGGAGGAGAAGATCCCATCCTCCTGCTGCTGCTGC
TGCTTCGTTTTCTCGCCACCTGCCATTTTACCGGTCCATTCCTTGGAATC
CTTTGCTGATG
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