CX295474

Overview
NameCX295474
Unique NameCX295474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL9_HUMAN (60S ribosomal protein L9 OS=Homo sapiens GN=RPL9 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.009e-39
Identity = 82/132 (62.12%), Postives = 95/132 (71.97%), Query Frame = -1
Query:  250 KIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPI 645
            ++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNF GEK +R+V M  GV    S   KDEL+L+GNDIELVS  AALI Q   VKNKDIRKFLDGIYVSEK  +
Sbjct:   56 RVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL9_BOVIN (60S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.009e-39
Identity = 82/132 (62.12%), Postives = 95/132 (71.97%), Query Frame = -1
Query:  250 KIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPI 645
            ++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNF GEK +R+V M  GV    S   KDEL+L+GNDIELVS  AALI Q   VKNKDIRKFLDGIYVSEK  +
Sbjct:   56 RVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL9_ICTPU (60S ribosomal protein L9 OS=Ictalurus punctatus GN=rpl9 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.720e-39
Identity = 83/136 (61.03%), Postives = 96/136 (70.59%), Query Frame = -1
Query:  238 KIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPILGEE 645
            ++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I      +EIRNF GEK +R+V M  GV    S   KDELVL+GNDIELVS  AALI Q   VKNKDIRKFLDGIYVSEK  ++  E
Sbjct:   56 RVDKWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQETGSLVEIRNFLGEKYIRRVRMRPGVNCALSAAQKDELVLEGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTVVEPE 191          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL9_PONAB (60S ribosomal protein L9 OS=Pongo abelii GN=RPL9 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.247e-39
Identity = 82/132 (62.12%), Postives = 94/132 (71.21%), Query Frame = -1
Query:  250 KIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPI 645
            ++D W+G+RK  A +RT  SHV N+I GVT G+RYKMR VYAHFPIN  I  N   +EIRNF GEK +R+V M  GV    S   KDEL+L GNDIELVS  AALI Q   VKNKDIRKFLDGIYVSEK  +
Sbjct:   56 RVDEWWGNRKELATVRTICSHVQNMIKGVTLGFRYKMRSVYAHFPINVVIQENGSLVEIRNFLGEKYIRRVRMRPGVACSVSQAQKDELILGGNDIELVSNSAALIQQATTVKNKDIRKFLDGIYVSEKGTV 187          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL9_CAEEL (60S ribosomal protein L9 OS=Caenorhabditis elegans GN=rpl-9 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.534e-38
Identity = 77/133 (57.89%), Postives = 98/133 (73.68%), Query Frame = -1
Query:  247 KIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPIL 645
            ++  WFG RK  AAIRT  SH+ N+I GVT G+RYKMR VYAHFPIN ++ + N+ +EIRNF GEK VR+V + +GV    S   KDE+V++GND++ VS+ AA I Q   VK KDIRKFLDGIYVSEK+ I+
Sbjct:   54 RVRKWFGVRKELAAIRTVCSHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIATISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIV 186          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL9B_SCHPO (60S ribosomal protein L9-B OS=Schizosaccharomyces pombe GN=rpl9b PE=2 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.610e-37
Identity = 77/132 (58.33%), Postives = 96/132 (72.73%), Query Frame = -1
Query:  250 KIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPI 645
            K   W GSRK +A IRTA S + N+I GVT+G+RYKMR VYAHFPIN ++  N   +EIRNF GE+  R +  L GVTV  S  VKDE++++GN +E VS+ AA I Q C+V+NKDIRKFLDGIYVSE+  I
Sbjct:   54 KFIVWHGSRKHNACIRTAYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIIIEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL9A_SCHPO (60S ribosomal protein L9-A OS=Schizosaccharomyces pombe GN=rpl9a PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 7.991e-37
Identity = 76/132 (57.58%), Postives = 95/132 (71.97%), Query Frame = -1
Query:  250 KIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPI 645
            K   W GSRK +A IR+  S + N+I GVT+G+RYKMR VYAHFPIN ++  N   +EIRNF GE+  R +  L GVTV  S  VKDE++L+GN +E VS+ AA I Q C+V+NKDIRKFLDGIYVSE+  I
Sbjct:   54 KFIVWHGSRKHNACIRSVYSIINNMIIGVTQGFRYKMRLVYAHFPININLTENGTVVEIRNFLGERITRVIKCLPGVTVSISSAVKDEIILEGNSLENVSQSAANIKQICNVRNKDIRKFLDGIYVSERGNI 185          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL9B_YEAST (60S ribosomal protein L9-B OS=Saccharomyces cerevisiae GN=RPL9B PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.037e-36
Identity = 80/135 (59.26%), Postives = 98/135 (72.59%), Query Frame = -1
Query:  247 KIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKSPIL 645
            K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+RNF G+KK+R V + DGVT+  S  VKDE+VL GN +E VS+ AA + Q C V+NKDIRKFLDGIYVS K  I+
Sbjct:   54 KVAVHNGDRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHKGFIV 188          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL9A_YEAST (60S ribosomal protein L9-A OS=Saccharomyces cerevisiae GN=RPL9A PE=1 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 3.966e-36
Identity = 79/131 (60.31%), Postives = 96/131 (73.28%), Query Frame = -1
Query:  259 KIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNN--KAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 645
            K+    G RK  AA+RT  S V N+ITGVTKGY+YKMR+VYAHFPIN +I   +  K IE+RNF G+KK+R V + DGVT+  S  VKDE+VL GN +E VS+ AA + Q C V+NKDIRKFLDGIYVS K
Sbjct:   54 KVAVHNGGRKHVAALRTVKSLVDNMITGVTKGYKYKMRYVYAHFPINVNIVEKDGAKFIEVRNFLGDKKIRNVPVRDGVTIEFSTNVKDEIVLSGNSVEDVSQNAADLQQICRVRNKDIRKFLDGIYVSHK 184          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_HYPBU (50S ribosomal protein L6P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 7.017e-25
Identity = 59/129 (45.74%), Postives = 86/129 (66.67%), Query Frame = -1
Query:  259 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKV-KDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 642
            ++A+F +R+  A + T  +H+ N+ITGVTKG+RYK++ VY+HFP+   +  +   IE  NF GEK  R   ++ GVTV    KV KD+++++G DIE V + AA I Q   VK+KD R F+DGIY+ EK
Sbjct:   60 VEAYFANRRVKALVGTIAAHIENMITGVTKGFRYKLKIVYSHFPVTVKVQGDKVVIE--NFLGEKAPRIAKIMPGVTV----KVQKDDVIVEGIDIEAVGQTAANIEQATKVKDKDRRVFIDGIYIYEK 182          
The following BLAST results are available for this feature:
BLAST of CX295474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL9_HUMAN1.009e-3962.1260S ribosomal protein L9 OS=Homo sapiens GN=RPL9 P... [more]
RL9_BOVIN1.009e-3962.1260S ribosomal protein L9 OS=Bos taurus GN=RPL9 PE=... [more]
RL9_ICTPU1.720e-3961.0360S ribosomal protein L9 OS=Ictalurus punctatus GN... [more]
RL9_PONAB2.247e-3962.1260S ribosomal protein L9 OS=Pongo abelii GN=RPL9 P... [more]
RL9_CAEEL5.534e-3857.8960S ribosomal protein L9 OS=Caenorhabditis elegans... [more]
RL9B_SCHPO1.610e-3758.3360S ribosomal protein L9-B OS=Schizosaccharomyces ... [more]
RL9A_SCHPO7.991e-3757.5860S ribosomal protein L9-A OS=Schizosaccharomyces ... [more]
RL9B_YEAST3.037e-3659.2660S ribosomal protein L9-B OS=Saccharomyces cerevi... [more]
RL9A_YEAST3.966e-3660.3160S ribosomal protein L9-A OS=Saccharomyces cerevi... [more]
RL6_HYPBU7.017e-2545.7450S ribosomal protein L6P OS=Hyperthermus butylicu... [more]

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Properties
Property NameValue
Genbank descriptionC05072F01SK PhIFruit1 Citrus clementina cDNA clone C05072F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295474 ID=CX295474; Name=CX295474; organism=Citrus clementina; type=EST; length=660bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGCCAGATGCATAGCTAT
AAAATCCATACATATTTTGGGATGATAGCAATTGAAGACATAAAATTGAA
ATCTAGAACTCCCAAGTCCCAAATCCCAAATACAACCAAAAGCATGTCCT
CAACTCAAAGTAAGAGGCAAAATTAAAAAGATTTAAAAAAAAATTCATAA
CATTACTATGACAAGAAAATTCGAAAGCTAATCATCATTCTTCTCCAAGT
ATGGGGCTTTTCTCACTGACATAGATCCCATCAAGAAATTTCCTAATGTC
CTTGTTCTTCACATGGCATTTCTGATTGATTAGAGCAGCAAAGCGAGACA
CGAGTTCAATGTCATTTCCATCAAGAACGAGTTCATCCTTAACCTTATCG
GACCTAATGACGGTAACACCATCAAGCATATCCACTTTTCGAACCTTTTT
CTCTCCAAAAAAGTTACGGATCTCAATGGCCTTGTTATTGTTACCGATGG
AGGCGTTGATGGGAAAGTGAGCGTACACAAATCTCATCTTGTAGCGATAG
CCCTTGGTAACACCAGTGATGAGATTGCCAACATGGCTGAGGGCAGTTCT
GATGGCGGCGCTGGTCTTGCGAGAGCCAAACCAGGCATCGATCTTAGCTT
GCGCTTACCG
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