CX295474

Overview
NameCX295474
Unique NameCX295474
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length660
Libraries
Library NameType
PhIFruit1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 49/119 (41.18%), Postives = 67/119 (56.30%), Query Frame = -1
Query:  262 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSE 618
            KT + + T  SHV N+  GVT+G+ Y M   Y+HFP+  S+   +  I I NF GEK  RK   + G T +  D   +EL + G  IE V + AA I Q   V +KD R F DG+Y++E
Sbjct:   57 KTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTP-VRGDTSVEVD--GEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = -1
Query:  259 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 621
            +K  A + T   H+ NLITGV +G+ Y ++ VYAHFPI   +  N   IE  NF GEK  R+  ++    V  S +   ++ + G DIE   + AA + Q   +K KD R F DGIY+ +K
Sbjct:   80 KKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.040e-15
Identity = 53/124 (42.74%), Postives = 70/124 (56.45%), Query Frame = -1
Query:  259 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSD---KVKDELV-LDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 618
            KTSA + T  SHV N+I GVT G+ Y+M   YAHFP+  S+  +   IE  NF GEK  R+       T IR D   ++  E+V L G   E V + AA I Q   V +KD R F DG+Y+++K
Sbjct:   62 KTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.583e-15
Identity = 44/128 (34.38%), Postives = 68/128 (53.12%), Query Frame = -1
Query:  259 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 642
            ++  F  +K  A I T  +H+ N+ITGVT G+ Y M+ V+AHFP+   +  N   + I NF GE+  R   ++    V+      DE+ + G + E V +  A + Q   +K +D R F DGIY+  K
Sbjct:   55 LETSFPRKKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 6.583e-15
Identity = 49/132 (37.12%), Postives = 73/132 (55.30%), Query Frame = -1
Query:  256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK---DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642
            +DA +  ++  A + T  SH+ NL+ GV +G+  KM  VYAHFP+   +  + K + I NF GEKK R         +I   KVK   +++ + G + E V + AA I QK  +K  D R F DGIY+ +K+
Sbjct:   53 VDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKKPR------FAKIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 48/126 (38.10%), Postives = 71/126 (56.35%), Query Frame = -1
Query:  259 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDML-DGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 630
            F ++K  A + T  SH+ N+I GV  G+ YKM+ VYAHFP+   +    K + I NF GE+  RK  ++ D V V     VK +++ + G + E V +  A I Q   +K +D R F DGIY+ +K
Sbjct:   59 FPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGERSPRKAKIIGDDVKV----SVKGEDVTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14
Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = -1
Query:  259 R*AQAKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 660
            R  + ++DA    ++  A + T  SH+ NL+ GV +G+  KM  +YAHFP+   +  + K + I NF GEKK R   +L G T ++     +E+ + G + E V + AA I QK  +K  D R F DGIY+ +K
Sbjct:   48 RDGEVEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKV--DGKTLIIGNFLGEKKPRIAKIL-GETKVKVS--GNEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13
Identity = 42/130 (32.31%), Postives = 71/130 (54.62%), Query Frame = -1
Query:  259 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLD--GVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 642
            I A   +R+  A +    +++ N+  GVT+G+ YK++ VY+HFP    +      + I NF GE   R  +++D     VI   +   ++++ G D E V + AA + Q  ++K++D R F DGIY+ EK
Sbjct:   72 IAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQ---DIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12
Identity = 43/134 (32.09%), Postives = 73/134 (54.48%), Query Frame = -1
Query:  256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKK--VRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRFAALINQKCHV--KNKDIRKFLDGIYVSEKS 642
            ++ +F +R+    I T  SH+ N++ GV   + Y+++  Y HFP+   +  N   +E  NF GEK   ++++  LD V V I  +K + E+V++  D E     A++I Q      K KD R+F DGI++  K+
Sbjct:   54 LETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYKA 185          
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11
Identity = 42/130 (32.31%), Postives = 68/130 (52.31%), Query Frame = -1
Query:  259 KIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 645
            KI+A   +      + T  S + N+I G+  G++Y+M+  Y+HFP+  S+    K + I NFFGE+  R  +++   TV ++ D+V     + G   + V   AA I +   +K  D R F DGIY+  K
Sbjct:   53 KINASKNNSMVRGIVGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGDTTVTVKGDRV----YIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISK 176          
The following BLAST results are available for this feature:
BLAST of CX295474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
RL6_NATPD3.859e-1541.1850S ribosomal protein L6P OS=Natronomonas pharaoni... [more]
RL6_ARCFU3.859e-1538.8450S ribosomal protein L6P OS=Archaeoglobus fulgidu... [more]
RL6_HALWD5.040e-1542.7450S ribosomal protein L6P OS=Haloquadratum walsbyi... [more]
RL6_METS36.583e-1534.3850S ribosomal protein L6P OS=Methanobrevibacter sm... [more]
RL6_METAC6.583e-1537.1250S ribosomal protein L6P OS=Methanosarcina acetiv... [more]
RL6_METST1.466e-1438.1050S ribosomal protein L6P OS=Methanosphaera stadtm... [more]
RL6_METBF1.466e-1436.5750S ribosomal protein L6P OS=Methanosarcina barker... [more]
RL6_METKA2.766e-1332.3150S ribosomal protein L6P OS=Methanopyrus kandleri... [more]
RL6_NANEQ1.373e-1232.0950S ribosomal protein L6P OS=Nanoarchaeum equitans... [more]
RL6_THEAC3.381e-1132.3150S ribosomal protein L6P OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionC05072F01SK PhIFruit1 Citrus clementina cDNA clone C05072F01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295474 ID=CX295474; Name=CX295474; organism=Citrus clementina; type=EST; length=660bp
TTTTTTTTTTTTTTTTTTTTTTTTTTTAAAAAGGCCAGATGCATAGCTAT
AAAATCCATACATATTTTGGGATGATAGCAATTGAAGACATAAAATTGAA
ATCTAGAACTCCCAAGTCCCAAATCCCAAATACAACCAAAAGCATGTCCT
CAACTCAAAGTAAGAGGCAAAATTAAAAAGATTTAAAAAAAAATTCATAA
CATTACTATGACAAGAAAATTCGAAAGCTAATCATCATTCTTCTCCAAGT
ATGGGGCTTTTCTCACTGACATAGATCCCATCAAGAAATTTCCTAATGTC
CTTGTTCTTCACATGGCATTTCTGATTGATTAGAGCAGCAAAGCGAGACA
CGAGTTCAATGTCATTTCCATCAAGAACGAGTTCATCCTTAACCTTATCG
GACCTAATGACGGTAACACCATCAAGCATATCCACTTTTCGAACCTTTTT
CTCTCCAAAAAAGTTACGGATCTCAATGGCCTTGTTATTGTTACCGATGG
AGGCGTTGATGGGAAAGTGAGCGTACACAAATCTCATCTTGTAGCGATAG
CCCTTGGTAACACCAGTGATGAGATTGCCAACATGGCTGAGGGCAGTTCT
GATGGCGGCGCTGGTCTTGCGAGAGCCAAACCAGGCATCGATCTTAGCTT
GCGCTTACCG
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