CX295474
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15 Identity = 49/119 (41.18%), Postives = 67/119 (56.30%), Query Frame = -1 Query: 262 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSE 618 KT + + T SHV N+ GVT+G+ Y M Y+HFP+ S+ + I I NF GEK RK + G T + D +EL + G IE V + AA I Q V +KD R F DG+Y++E Sbjct: 57 KTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTP-VRGDTSVEVD--GEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.859e-15 Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = -1 Query: 259 RKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 621 +K A + T H+ NLITGV +G+ Y ++ VYAHFPI + N IE NF GEK R+ ++ V S + ++ + G DIE + AA + Q +K KD R F DGIY+ +K Sbjct: 80 KKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.040e-15 Identity = 53/124 (42.74%), Postives = 70/124 (56.45%), Query Frame = -1 Query: 259 KTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSD---KVKDELV-LDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 618 KTSA + T SHV N+I GVT G+ Y+M YAHFP+ S+ + IE NF GEK R+ T IR D ++ E+V L G E V + AA I Q V +KD R F DG+Y+++K Sbjct: 62 KTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METS3 (50S ribosomal protein L6P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl6p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.583e-15 Identity = 44/128 (34.38%), Postives = 68/128 (53.12%), Query Frame = -1 Query: 259 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 642 ++ F +K A I T +H+ N+ITGVT G+ Y M+ V+AHFP+ + N + I NF GE+ R ++ V+ DE+ + G + E V + A + Q +K +D R F DGIY+ K Sbjct: 55 LETSFPRKKDKAMIGTTKAHISNMITGVTDGFEYHMKIVFAHFPMTVKV--NKDVVVIDNFLGERHPRTAKVVGSAKVVVKG---DEVTITGINKEHVGQTMANLEQATKIKGRDPRVFQDGIYLISK 177
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 6.583e-15 Identity = 49/132 (37.12%), Postives = 73/132 (55.30%), Query Frame = -1 Query: 256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVK---DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEKS 642 +DA + ++ A + T SH+ NL+ GV +G+ KM VYAHFP+ + + K + I NF GEKK R +I KVK +++ + G + E V + AA I QK +K D R F DGIY+ +K+ Sbjct: 53 VDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKKPR------FAKIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METST (50S ribosomal protein L6P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl6p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14 Identity = 48/126 (38.10%), Postives = 71/126 (56.35%), Query Frame = -1 Query: 259 FGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDML-DGVTVIRSDKVK-DELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 630 F ++K A + T SH+ N+I GV G+ YKM+ VYAHFP+ + K + I NF GE+ RK ++ D V V VK +++ + G + E V + A I Q +K +D R F DGIY+ +K Sbjct: 59 FPNKKDKAMVGTIRSHISNMIYGVDHGFTYKMKIVYAHFPMTVKV--QGKIVTIDNFLGERSPRKAKIIGDDVKV----SVKGEDVTITGINKEHVGQTMANIEQATKIKGRDPRIFQDGIYLVDK 178
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.466e-14 Identity = 49/134 (36.57%), Postives = 75/134 (55.97%), Query Frame = -1 Query: 259 R*AQAKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 660 R + ++DA ++ A + T SH+ NL+ GV +G+ KM +YAHFP+ + + K + I NF GEKK R +L G T ++ +E+ + G + E V + AA I QK +K D R F DGIY+ +K Sbjct: 48 RDGEVEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKV--DGKTLIIGNFLGEKKPRIAKIL-GETKVKVS--GNEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.766e-13 Identity = 42/130 (32.31%), Postives = 71/130 (54.62%), Query Frame = -1 Query: 259 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLD--GVTVIRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 642 I A +R+ A + +++ N+ GVT+G+ YK++ VY+HFP + + I NF GE R +++D VI + ++++ G D E V + AA + Q ++K++D R F DGIY+ EK Sbjct: 72 IAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQ---DIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.373e-12 Identity = 43/134 (32.09%), Postives = 73/134 (54.48%), Query Frame = -1 Query: 256 IDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKK--VRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRFAALINQKCHV--KNKDIRKFLDGIYVSEKS 642 ++ +F +R+ I T SH+ N++ GV + Y+++ Y HFP+ + N +E NF GEK ++++ LD V V I +K + E+V++ D E A++I Q K KD R+F DGI++ K+ Sbjct: 54 LETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYKA 185
BLAST of CX295474 vs. ExPASy Swiss-Prot
Match: RL6_THEAC (50S ribosomal protein L6P OS=Thermoplasma acidophilum GN=rpl6p PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 3.381e-11 Identity = 42/130 (32.31%), Postives = 68/130 (52.31%), Query Frame = -1 Query: 259 KIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFFGEKKVRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRFAALINQKCHVKNKDIRKFLDGIYVSEK 645 KI+A + + T S + N+I G+ G++Y+M+ Y+HFP+ S+ K + I NFFGE+ R +++ TV ++ D+V + G + V AA I + +K D R F DGIY+ K Sbjct: 53 KINASKNNSMVRGIVGTWASEINNMIKGLKDGFQYEMKIDYSHFPMRVSV--KGKTVVIENFFGERSPRTAEIVGDTTVTVKGDRV----YIAGISKKDVGETAANIERSTIIKGFDPRVFQDGIYLISK 176 The following BLAST results are available for this feature:
BLAST of CX295474 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 62
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295474 ID=CX295474; Name=CX295474; organism=Citrus clementina; type=EST; length=660bpback to top |