CX295531

Overview
NameCX295531
Unique NameCX295531
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295531 vs. ExPASy Swiss-Prot
Match: CATB_CHICK (Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.022e-16
Identity = 53/147 (36.05%), Postives = 68/147 (46.26%), Query Frame = 1
Query:  256 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHD----KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYF 678
            L   ++  +N+    G +A  N  F N  +   K L G         LG P         + + LP +FD R  WP C TIS I DQG CGSCWAFGAVEA+SDR C+H    +S+ V+                   YP  AWRY+
Sbjct:   26 LSSDLVNHINKLNTTG-RAGHN--FHNTDMSYVKKLCGT-------FLGGPKAPERVDFAEDMDLPDTFDTRKQWPNCPTISEIRDQGSCGSCWAFGAVEAISDRICVHTNAKVSVEVSAEDLLSCCGFECGMGCNGGYPSGAWRYW 162          
BLAST of CX295531 vs. ExPASy Swiss-Prot
Match: CATB_PIG (Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.276e-16
Identity = 53/147 (36.05%), Postives = 66/147 (44.90%), Query Frame = 1
Query:  256 LQDSIIKEVNENPKAGWKAARNPQFSNYTVGQFKHLLGVKPTPKGLLLGVPVKTHDKSLK----LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCIHFG--MNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYF 678
            L D ++  +N+     W A  N  F N  +   K L G         LG P      +      LPKSFDAR  WP C TI  I DQG CGSCWAFGAVEA+SDR CI     +N+ +S                   +P  AW ++
Sbjct:   26 LSDELVNFINKQ-NTTWTAGHN--FYNVDLSYVKKLCGT-------FLGGPKLPQRAAFAADMILPKSFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICIRSNGRVNVEVSAEDMLTCCGDECGDGCNGGFPSGAWNFW 162          
BLAST of CX295531 vs. ExPASy Swiss-Prot
Match: CPR4_CAEEL (Cathepsin B-like cysteine proteinase 4 OS=Caenorhabditis elegans GN=cpr-4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.803e-13
Identity = 42/96 (43.75%), Postives = 51/96 (53.12%), Query Frame = 1
Query:  403 VPVKTHD-KSLKLPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVNXXXXXXXXXXXXXXXXXYPISAWRYFV 681
            V V  HD     +P +FDAR+ WP C +I+ I DQ  CGSCWAF A EA SDRFCI  +  +N  LS                   YPI+AW+Y V
Sbjct:   69 VEVVKHDINEDTIPATFDARTQWPNCMSINNIRDQSDCGSCWAFAAAEAASDRFCIASNGAVNTLLSAE-DVLSCCSNCGYGCEGGYPINAWKYLV 163          
BLAST of CX295531 vs. ExPASy Swiss-Prot
Match: CPR5_CAEEL (Cathepsin B-like cysteine proteinase 5 OS=Caenorhabditis elegans GN=cpr-5 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 36/86 (41.86%), Postives = 45/86 (52.33%), Query Frame = 1
Query:  436 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI--HFGMNLSLSVN--XXXXXXXXXXXXXXXXXYPISAWRYFV 681
            +P  FDAR  WP C +I+ I DQ  CGSCWAF A EA+SDR CI  +  +N  LS                     YPI AW+++V
Sbjct:   82 IPDHFDARDQWPNCMSINNIRDQSDCGSCWAFAAAEAISDRTCIASNGAVNTLLSSEDLLSCCTGMFSCGNGCEGGYPIQAWKWWV 167          
BLAST of CX295531 vs. ExPASy Swiss-Prot
Match: CPR3_CAEEL (Cathepsin B-like cysteine proteinase 3 OS=Caenorhabditis elegans GN=cpr-3 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 28/44 (63.64%), Postives = 32/44 (72.73%), Query Frame = 1
Query:  436 LPKSFDARSAWPQCSTISRILDQGHCGSCWAFGAVEALSDRFCI 567
            LP +FDAR  WP C+TI  I +Q  CGSCWAFGA E +SDR CI
Sbjct:   92 LPDTFDAREKWPDCNTIKLIRNQATCGSCWAFGAAEVISDRVCI 135          
The following BLAST results are available for this feature:
BLAST of CX295531 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
CATB_CHICK1.022e-1636.05Cathepsin B OS=Gallus gallus GN=CTSB PE=2 SV=1[more]
CATB_PIG2.276e-1636.05Cathepsin B OS=Sus scrofa GN=CTSB PE=1 SV=1[more]
CPR4_CAEEL1.803e-1343.75Cathepsin B-like cysteine proteinase 4 OS=Caenorha... [more]
CPR5_CAEEL2.204e-1141.86Cathepsin B-like cysteine proteinase 5 OS=Caenorha... [more]
CPR3_CAEEL4.910e-1163.64Cathepsin B-like cysteine proteinase 3 OS=Caenorha... [more]

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Properties
Property NameValue
Genbank descriptionC05073B11SK DroRLeaf1 Citrus clementina cDNA clone C05073B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295531 ID=CX295531; Name=CX295531; organism=Citrus clementina; type=EST; length=698bp
AGGCTATTATTGGACTTTGTCATTATTTTATTAACCTAATCCTCTTGCTT
CCCAATAAGAAGGGGCCCGGGGGGTTGGCTCACAACACAAGAAAAGTGCT
CTCTCCCATTTCTCCTCTCTTCGTCCTTCCCGAGCCAGTCATCCATGGCT
TCATCTCACCTCTTTCTTACTACATGTTTGTTAATTCTTGGCGTTATCTC
CTCCCAGACTTTTGCAGAGGGAGTGGTTTCCAAGCTCAAGCTTGATTCTC
ATATTCTCCAGGATTCAATCATCAAAGAAGTGAATGAGAACCCTAAGGCT
GGATGGAAAGCTGCCAGAAATCCTCAATTTTCCAATTACACTGTTGGGCA
ATTTAAGCACCTTCTTGGAGTCAAGCCAACACCTAAAGGGCTGCTCTTGG
GTGTCCCTGTTAAAACTCATGACAAATCCTTGAAGTTGCCTAAAAGCTTT
GATGCAAGGTCCGCTTGGCCACAATGCAGCACCATTAGTAGGATCCTAGA
TCAGGGCCATTGTGGTTCTTGTTGGGCTTTTGGTGCTGTTGAAGCGCTAT
CTGATCGTTTCTGCATCCATTTTGGCATGAACCTATCTCTATCAGTTAAT
GATCTTTTAGCCTGCTGTGGCTTTTTGTGTGGAGATGGTTGTGACGGGGG
TTATCCAATTTCTGCATGGCGATACTTTGTCCCCATGGTGTTGTTACC
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