CX295556

Overview
NameCX295556
Unique NameCX295556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_CARHZ (Chaperone protein dnaJ OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.168e-13
Identity = 38/64 (59.38%), Postives = 49/64 (76.56%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDS-RAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGVA++AT  +IK+AYR LARKYHPDV+KD   A E FK I  AYEVLS+   R +YD+
Sbjct:    4 DYYEILGVARNATPEEIKKAYRKLARKYHPDVNKDDPNAAEKFKEINEAYEVLSDPEKRARYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_BACST (Chaperone protein dnaJ OS=Bacillus stearothermophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.444e-13
Identity = 34/63 (53.97%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGV+++AT  +IK+AYR L++KYHPDV+K+  A E FK I+ AYEVLS++  R  YD+
Sbjct:    5 DYYEILGVSKNATKEEIKKAYRKLSKKYHPDVNKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOSW (Chaperone protein dnaJ OS=Geobacillus sp. (strain WCH70) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 33/63 (52.38%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGV+++AT  +IK+AYR L++KYHPD++K+  A E FK I+ AYEVLS++  R  YD+
Sbjct:    5 DYYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_BACTR (Chaperone protein dnaJ OS=Bacillus thermoglucosidasius GN=dnaJ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 33/63 (52.38%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGV+++AT  +IK+AYR L++KYHPD++K+  A E FK I+ AYEVLS++  R  YD+
Sbjct:    5 DYYEILGVSKNATKEEIKKAYRKLSKKYHPDINKEPDAAEKFKEIKEAYEVLSDDQKRAHYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SERP5 (Curved DNA-binding protein OS=Serratia proteamaculans (strain 568) GN=cbpA PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.110e-13
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSD---RSRRGNRRYSSEFED 460
            D+Y +LGV  +  L  IK AYR LARKYHPDVS +S A E FK +  AYEVL ++  R +YD+  + R D +   +++ G+   + +F D
Sbjct:    5 DYYAILGVKPADDLKAIKTAYRRLARKYHPDVSTESNAEEQFKLVAEAYEVLKDDERRAEYDQLREHRNDPNFGRQTQHGSAHNAEDFSD 94          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOTN (Chaperone protein dnaJ OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 34/63 (53.97%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLGV+++AT  +IK+AYR L+++YHPD++K   A E FK I+ AYEVLS++  R +YDR
Sbjct:    5 DYYEVLGVSKNATKDEIKKAYRKLSKQYHPDINKAPDAAEKFKEIKEAYEVLSDDEKRARYDR 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_GEOKA (Chaperone protein dnaJ OS=Geobacillus kaustophilus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.286e-13
Identity = 34/63 (53.97%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGV+++AT  +IK+AYR L+++YHPDV+K   A E FK I+ AYEVLS++  R +YDR
Sbjct:    5 DYYEILGVSKNATKDEIKKAYRKLSKQYHPDVNKAPDAAEKFKEIKEAYEVLSDDEKRARYDR 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_SYNP2 (Chaperone protein dnaJ OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D Y++LGV++     ++KRAYR LAR+YHPDV+KD  A E FK I  AYEVLS   TR +YDR
Sbjct:    4 DFYEILGVSRDCGKDELKRAYRRLARQYHPDVNKDPGAEEKFKEINRAYEVLSEPETRARYDR 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_STAEQ (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLGV +SA+  +IK+AYR L++KYHPD++K+  A E FK I  AYEVLS+E  R+ YD+
Sbjct:    5 DYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRVNYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_BACA2 (Chaperone protein dnaJ OS=Bacillus amyloliquefaciens (strain FZB42) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.213e-12
Identity = 33/63 (52.38%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLGV++SA+  +IK+AYR L++KYHPD++K+S A E FK ++ AYE LS++  R +YD+
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKESGADEKFKEVKEAYEALSDDQKRAQYDQ 67          
The following BLAST results are available for this feature:
BLAST of CX295556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
DNAJ_CARHZ4.168e-1359.38Chaperone protein dnaJ OS=Carboxydothermus hydroge... [more]
DNAJ_BACST5.444e-1353.97Chaperone protein dnaJ OS=Bacillus stearothermophi... [more]
DNAJ_GEOSW7.110e-1352.38Chaperone protein dnaJ OS=Geobacillus sp. (strain ... [more]
DNAJ_BACTR7.110e-1352.38Chaperone protein dnaJ OS=Bacillus thermoglucosida... [more]
CBPA_SERP57.110e-1343.33Curved DNA-binding protein OS=Serratia proteamacul... [more]
DNAJ_GEOTN9.286e-1353.97Chaperone protein dnaJ OS=Geobacillus thermodenitr... [more]
DNAJ_GEOKA9.286e-1353.97Chaperone protein dnaJ OS=Geobacillus kaustophilus... [more]
DNAJ_SYNP21.213e-1257.14Chaperone protein dnaJ OS=Synechococcus sp. (strai... [more]
DNAJ_STAEQ1.213e-1255.56Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
DNAJ_BACA21.213e-1252.38Chaperone protein dnaJ OS=Bacillus amyloliquefacie... [more]

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Properties
Property NameValue
Genbank descriptionC05073E01SK DroRLeaf1 Citrus clementina cDNA clone C05073E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295556 ID=CX295556; Name=CX295556; organism=Citrus clementina; type=EST; length=715bp
GAGGCTCCTGGTGGGACCCATAACTCCCACTACCGGCTCCGATGCGTTCT
CCTCCATCATCAAAAACAGTTTCCTGATCTCCTCTCCTCGCCGCAGCACC
ACCGGCAGTAACCGCAACAGAAGAACCCGCCACCGCTTGGTGGTCGCGTC
ATCGTCTTGGTCATCATCCGCCGCGGCGGCGGCCATAAACGGCGAGCCGG
ACCATTACAAAGTTCTGGGCGTCGCTCAAAGTGCCACGCTAGCTGATATT
AAGAGGGCTTATCGCCTCCTCGCTCGTAAGTATCATCCCGACGTTAGCAA
GGATTCACGAGCGGTTGAAGTGTTCAAGACCATCCGTTGTGCTTATGAAG
TATTATCTAATGAAGTAACAAGAATTAAGTATGATCGGGCACTCAAATTT
CGAACGGATAGTGACAGATCACGTAGAGGAAACAGGAGGTACAGCAGTGA
ATTTGAAGACGGGGTAAGGATCTCTACATGGGCTGAACTGAGGCGAAAAC
TTCAATATGAGAGATATTGGAAAAATTATAACTCAAAAGAAGAGTATTCT
TCCTTCTATCGTAAAGCACCAGTCCGGGAAGTTCAAGAGGAAAACCCAGG
TGATAAGAGAGGCTCCTTTACTGCAGTGCTAAGATCAGCATTTATCTCTT
TATTCTTACTGAAGGTCTTTGGGTCCCAACTATCCCTCACTTTTAGTAGC
CTCACGGCTTTGTTT
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