CX295556

Overview
NameCX295556
Unique NameCX295556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_METTH (Chaperone protein dnaJ OS=Methanobacterium thermoautotrophicum GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 36/63 (57.14%), Postives = 45/63 (71.43%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGV + A   +IK+AYR LARKYHPDVS D  A E FK I  AY VLS++  R +YDR
Sbjct:    5 DYYEILGVDRGADKKEIKKAYRRLARKYHPDVSDDPDAAEKFKEISEAYAVLSDDEKRARYDR 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_GLOVI (Chaperone protein dnaJ OS=Gloeobacter violaceus GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D Y+ L V++ A+  DIKRAYR LAR+YHPDV+KD+ A + FK +  AYEVLS++  R +YDR
Sbjct:    4 DLYETLNVSRDASKEDIKRAYRKLARQYHPDVNKDAGAEDTFKELSRAYEVLSDDDQRARYDR 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_ERYRH (Chaperone protein dnaJ OS=Erysipelothrix rhusiopathiae GN=dnaJ PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.069e-12
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D Y++LGV++SAT A+IK+AYR LA+KYHPD++K+  A   FK ++ AYEVLS+   R  YD+
Sbjct:    6 DFYEILGVSKSATDAEIKKAYRQLAKKYHPDINKEDGAEAKFKEVQEAYEVLSDSQKRANYDQ 68          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_NOSP7 (Chaperone protein dnaJ OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGV++     ++K+AYR LARKYHPDV+K+  A + FK I  AYEVLS   TR +YDR
Sbjct:    4 DYYEILGVSRDTDKEELKQAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSEPETRARYDR 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_BACLD (Chaperone protein dnaJ OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.702e-12
Identity = 32/63 (50.79%), Postives = 49/63 (77.78%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLGV +SA+  +IK+AYR L++KYHPD++K++ A E FK ++ AYE LS++  R  YD+
Sbjct:    5 DYYEVLGVGKSASKDEIKKAYRKLSKKYHPDINKEAGAAEKFKEVKEAYETLSDDQKRAHYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_TRIEI (Chaperone protein dnaJ OS=Trichodesmium erythraeum (strain IMS101) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGV++SA   ++KRAYR LARKYHPDV+K+  + E FK I  AYE+LS+   + ++DR
Sbjct:    4 DYYEILGVSRSADKEELKRAYRRLARKYHPDVNKEPGSEERFKEINRAYEILSDPEMKARFDR 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_STAES (Chaperone protein dnaJ OS=Staphylococcus epidermidis (strain ATCC 12228) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 35/63 (55.56%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLGV +SA+  +IK+AYR L++KYHPD++K+  A E FK I  AYEVLS+E  R  YD+
Sbjct:    5 DYYEVLGVNKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDENKRANYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALCH (Curved DNA-binding protein OS=Salmonella choleraesuis GN=cbpA PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.529e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPNAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_STAS1 (Chaperone protein dnaJ OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 34/63 (53.97%), Postives = 49/63 (77.78%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLGV++SA+  +IK+AYR L+++YHPD++K+  A E FK I  AYEVLS+E  R  YD+
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRKLSKQYHPDINKEEGADEKFKEISEAYEVLSDENKRANYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_MYCGA (Chaperone protein dnaJ OS=Mycoplasma gallisepticum GN=dnaJ PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 36/67 (53.73%), Postives = 49/67 (73.13%), Query Frame = 2
Query:  185 INGEPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYD 385
            ++ + D+Y++L V++SAT  DIK+A+R LA KYHPD +KDS A E FK +  AYEVLS+E  R  YD
Sbjct:    1 MSSKRDYYEILEVSRSATQQDIKKAFRKLAMKYHPDRNKDSDAEEKFKEVNEAYEVLSDEEKRKLYD 67          
The following BLAST results are available for this feature:
BLAST of CX295556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
DNAJ_METTH2.069e-1257.14Chaperone protein dnaJ OS=Methanobacterium thermoa... [more]
DNAJ_GLOVI2.069e-1255.56Chaperone protein dnaJ OS=Gloeobacter violaceus GN... [more]
DNAJ_ERYRH2.069e-1253.97Chaperone protein dnaJ OS=Erysipelothrix rhusiopat... [more]
DNAJ_NOSP72.702e-1253.97Chaperone protein dnaJ OS=Nostoc punctiforme (stra... [more]
DNAJ_BACLD2.702e-1250.79Chaperone protein dnaJ OS=Bacillus licheniformis (... [more]
DNAJ_TRIEI3.529e-1252.38Chaperone protein dnaJ OS=Trichodesmium erythraeum... [more]
DNAJ_STAES3.529e-1255.56Chaperone protein dnaJ OS=Staphylococcus epidermid... [more]
CBPA_SALCH3.529e-1234.96Curved DNA-binding protein OS=Salmonella choleraes... [more]
DNAJ_STAS14.609e-1253.97Chaperone protein dnaJ OS=Staphylococcus saprophyt... [more]
DNAJ_MYCGA4.609e-1253.73Chaperone protein dnaJ OS=Mycoplasma gallisepticum... [more]

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Properties
Property NameValue
Genbank descriptionC05073E01SK DroRLeaf1 Citrus clementina cDNA clone C05073E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295556 ID=CX295556; Name=CX295556; organism=Citrus clementina; type=EST; length=715bp
GAGGCTCCTGGTGGGACCCATAACTCCCACTACCGGCTCCGATGCGTTCT
CCTCCATCATCAAAAACAGTTTCCTGATCTCCTCTCCTCGCCGCAGCACC
ACCGGCAGTAACCGCAACAGAAGAACCCGCCACCGCTTGGTGGTCGCGTC
ATCGTCTTGGTCATCATCCGCCGCGGCGGCGGCCATAAACGGCGAGCCGG
ACCATTACAAAGTTCTGGGCGTCGCTCAAAGTGCCACGCTAGCTGATATT
AAGAGGGCTTATCGCCTCCTCGCTCGTAAGTATCATCCCGACGTTAGCAA
GGATTCACGAGCGGTTGAAGTGTTCAAGACCATCCGTTGTGCTTATGAAG
TATTATCTAATGAAGTAACAAGAATTAAGTATGATCGGGCACTCAAATTT
CGAACGGATAGTGACAGATCACGTAGAGGAAACAGGAGGTACAGCAGTGA
ATTTGAAGACGGGGTAAGGATCTCTACATGGGCTGAACTGAGGCGAAAAC
TTCAATATGAGAGATATTGGAAAAATTATAACTCAAAAGAAGAGTATTCT
TCCTTCTATCGTAAAGCACCAGTCCGGGAAGTTCAAGAGGAAAACCCAGG
TGATAAGAGAGGCTCCTTTACTGCAGTGCTAAGATCAGCATTTATCTCTT
TATTCTTACTGAAGGTCTTTGGGTCCCAACTATCCCTCACTTTTAGTAGC
CTCACGGCTTTGTTT
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