CX295556

Overview
NameCX295556
Unique NameCX295556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_BREBN (Chaperone protein dnaJ OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D Y+VLGVA+ A   +IK+AYR LAR+YHPDV+K++ A E FK ++ AY++LS    R +YDR
Sbjct:    4 DLYEVLGVAKDADADEIKKAYRKLARQYHPDVNKEADAEEKFKEVKDAYDILSEPQKRAQYDR 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_COXBU (Curved DNA-binding protein OS=Coxiella burnetii GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYD 385
            D+YK+LGV++ AT  +IK++YR LARKYHPDVS +  A E FK ++ AYEVL +   R  YD
Sbjct:    5 DYYKILGVSRDATADEIKKSYRKLARKYHPDVSSEPNAEEKFKQVKEAYEVLKDVEKRKAYD 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_COXBR (Curved DNA-binding protein OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYD 385
            D+YK+LGV++ AT  +IK++YR LARKYHPDVS +  A E FK ++ AYEVL +   R  YD
Sbjct:    5 DYYKILGVSRDATADEIKKSYRKLARKYHPDVSSEPNAEEKFKQVKEAYEVLKDVEKRKAYD 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_COXBN (Curved DNA-binding protein OS=Coxiella burnetii (strain Dugway 5J108-111) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 34/62 (54.84%), Postives = 45/62 (72.58%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYD 385
            D+YK+LGV++ AT  +IK++YR LARKYHPDVS +  A E FK ++ AYEVL +   R  YD
Sbjct:    5 DYYKILGVSRDATADEIKKSYRKLARKYHPDVSSEPNAEEKFKQVKEAYEVLKDVEKRKAYD 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_RICAH (Chaperone protein dnaJ OS=Rickettsia akari (strain Hartford) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 36/87 (41.38%), Postives = 54/87 (62.07%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRRYSSEFED 460
            D+YK+LGV+++A+ AD+K+AY  LA++YHPD + D  A + FK I  AY+VL +E  R  YDR       + +SR G   ++    D
Sbjct:    4 DYYKILGVSKTASQADLKKAYLKLAKQYHPDTTDDKDAEKKFKEINRAYDVLKDEQKRAAYDRFGHDTFQNQQSRGGGGSHAGFHHD 90          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ1_SYNY3 (Chaperone protein dnaJ 1 OS=Synechocystis sp. (strain PCC 6803) GN=dnaJ1 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 36/63 (57.14%), Postives = 44/63 (69.84%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+ LGV + A   +IKRAYR LARKYHPDV+K+  A E FK I  AYEVLS    R +YD+
Sbjct:    4 DYYQTLGVTRDADKDEIKRAYRRLARKYHPDVNKEPGAEEKFKEINRAYEVLSEPEIRQRYDQ 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALTY (Curved DNA-binding protein OS=Salmonella typhimurium GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALTI (Curved DNA-binding protein OS=Salmonella typhi GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALSV (Curved DNA-binding protein OS=Salmonella schwarzengrund (strain CVM19633) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALPK (Curved DNA-binding protein OS=Salmonella paratyphi A (strain AKU_12601) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127          
The following BLAST results are available for this feature:
BLAST of CX295556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
DNAJ_BREBN4.609e-1253.97Chaperone protein dnaJ OS=Brevibacillus brevis (st... [more]
CBPA_COXBU4.609e-1254.84Curved DNA-binding protein OS=Coxiella burnetii GN... [more]
CBPA_COXBR4.609e-1254.84Curved DNA-binding protein OS=Coxiella burnetii (s... [more]
CBPA_COXBN4.609e-1254.84Curved DNA-binding protein OS=Coxiella burnetii (s... [more]
DNAJ_RICAH6.019e-1241.38Chaperone protein dnaJ OS=Rickettsia akari (strain... [more]
DNAJ1_SYNY36.019e-1257.14Chaperone protein dnaJ 1 OS=Synechocystis sp. (str... [more]
CBPA_SALTY6.019e-1234.96Curved DNA-binding protein OS=Salmonella typhimuri... [more]
CBPA_SALTI6.019e-1234.96Curved DNA-binding protein OS=Salmonella typhi GN=... [more]
CBPA_SALSV6.019e-1234.96Curved DNA-binding protein OS=Salmonella schwarzen... [more]
CBPA_SALPK6.019e-1234.96Curved DNA-binding protein OS=Salmonella paratyphi... [more]

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Properties
Property NameValue
Genbank descriptionC05073E01SK DroRLeaf1 Citrus clementina cDNA clone C05073E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295556 ID=CX295556; Name=CX295556; organism=Citrus clementina; type=EST; length=715bp
GAGGCTCCTGGTGGGACCCATAACTCCCACTACCGGCTCCGATGCGTTCT
CCTCCATCATCAAAAACAGTTTCCTGATCTCCTCTCCTCGCCGCAGCACC
ACCGGCAGTAACCGCAACAGAAGAACCCGCCACCGCTTGGTGGTCGCGTC
ATCGTCTTGGTCATCATCCGCCGCGGCGGCGGCCATAAACGGCGAGCCGG
ACCATTACAAAGTTCTGGGCGTCGCTCAAAGTGCCACGCTAGCTGATATT
AAGAGGGCTTATCGCCTCCTCGCTCGTAAGTATCATCCCGACGTTAGCAA
GGATTCACGAGCGGTTGAAGTGTTCAAGACCATCCGTTGTGCTTATGAAG
TATTATCTAATGAAGTAACAAGAATTAAGTATGATCGGGCACTCAAATTT
CGAACGGATAGTGACAGATCACGTAGAGGAAACAGGAGGTACAGCAGTGA
ATTTGAAGACGGGGTAAGGATCTCTACATGGGCTGAACTGAGGCGAAAAC
TTCAATATGAGAGATATTGGAAAAATTATAACTCAAAAGAAGAGTATTCT
TCCTTCTATCGTAAAGCACCAGTCCGGGAAGTTCAAGAGGAAAACCCAGG
TGATAAGAGAGGCTCCTTTACTGCAGTGCTAAGATCAGCATTTATCTCTT
TATTCTTACTGAAGGTCTTTGGGTCCCAACTATCCCTCACTTTTAGTAGC
CTCACGGCTTTGTTT
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