CX295556

Overview
NameCX295556
Unique NameCX295556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALPC (Curved DNA-binding protein OS=Salmonella paratyphi C (strain RKS4594) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2 
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127
[Close]
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALPB (Curved DNA-binding protein OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2 
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127
[Close]
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALPA (Curved DNA-binding protein OS=Salmonella paratyphi A GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2 
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127
[Close]
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALNS (Curved DNA-binding protein OS=Salmonella newport (strain SL254) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2 
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127
[Close]
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALHS (Curved DNA-binding protein OS=Salmonella heidelberg (strain SL476) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2 
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127
[Close]
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALG2 (Curved DNA-binding protein OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2 
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127
[Close]
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALEP (Curved DNA-binding protein OS=Salmonella enteritidis PT4 (strain P125109) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2 
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127
[Close]
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALDC (Curved DNA-binding protein OS=Salmonella dublin (strain CT_02021853) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2 
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127
[Close]
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALAR (Curved DNA-binding protein OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2 
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127
[Close]
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_SALA4 (Curved DNA-binding protein OS=Salmonella agona (strain SL483) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 43/123 (34.96%), Postives = 68/123 (55.28%), Query Frame = 2 
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRRGNRR----YSSEFEDGVRISTWAELRRKLQYERYWKNYNSKEEYSSF 556
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+  +     Y++E  D +  S + +  R   +    + ++ + E + F
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIFGQHGRHSHHRHAARGHDIEIEVAVF 127
The following BLAST results are available for this feature:
BLAST of CX295556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CBPA_SALPC6.019e-1234.96Curved DNA-binding protein OS=Salmonella paratyphi... [more]
CBPA_SALPB6.019e-1234.96Curved DNA-binding protein OS=Salmonella paratyphi... [more]
CBPA_SALPA6.019e-1234.96Curved DNA-binding protein OS=Salmonella paratyphi... [more]
CBPA_SALNS6.019e-1234.96Curved DNA-binding protein OS=Salmonella newport (... [more]
CBPA_SALHS6.019e-1234.96Curved DNA-binding protein OS=Salmonella heidelber... [more]
CBPA_SALG26.019e-1234.96Curved DNA-binding protein OS=Salmonella gallinaru... [more]
CBPA_SALEP6.019e-1234.96Curved DNA-binding protein OS=Salmonella enteritid... [more]
CBPA_SALDC6.019e-1234.96Curved DNA-binding protein OS=Salmonella dublin (s... [more]
CBPA_SALAR6.019e-1234.96Curved DNA-binding protein OS=Salmonella arizonae ... [more]
CBPA_SALA46.019e-1234.96Curved DNA-binding protein OS=Salmonella agona (st... [more]

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Properties
Property NameValue
Genbank descriptionC05073E01SK DroRLeaf1 Citrus clementina cDNA clone C05073E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295556 ID=CX295556; Name=CX295556; organism=Citrus clementina; type=EST; length=715bp
GAGGCTCCTGGTGGGACCCATAACTCCCACTACCGGCTCCGATGCGTTCT
CCTCCATCATCAAAAACAGTTTCCTGATCTCCTCTCCTCGCCGCAGCACC
ACCGGCAGTAACCGCAACAGAAGAACCCGCCACCGCTTGGTGGTCGCGTC
ATCGTCTTGGTCATCATCCGCCGCGGCGGCGGCCATAAACGGCGAGCCGG
ACCATTACAAAGTTCTGGGCGTCGCTCAAAGTGCCACGCTAGCTGATATT
AAGAGGGCTTATCGCCTCCTCGCTCGTAAGTATCATCCCGACGTTAGCAA
GGATTCACGAGCGGTTGAAGTGTTCAAGACCATCCGTTGTGCTTATGAAG
TATTATCTAATGAAGTAACAAGAATTAAGTATGATCGGGCACTCAAATTT
CGAACGGATAGTGACAGATCACGTAGAGGAAACAGGAGGTACAGCAGTGA
ATTTGAAGACGGGGTAAGGATCTCTACATGGGCTGAACTGAGGCGAAAAC
TTCAATATGAGAGATATTGGAAAAATTATAACTCAAAAGAAGAGTATTCT
TCCTTCTATCGTAAAGCACCAGTCCGGGAAGTTCAAGAGGAAAACCCAGG
TGATAAGAGAGGCTCCTTTACTGCAGTGCTAAGATCAGCATTTATCTCTT
TATTCTTACTGAAGGTCTTTGGGTCCCAACTATCCCTCACTTTTAGTAGC
CTCACGGCTTTGTTT
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