CX295556

Overview
NameCX295556
Unique NameCX295556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_ECOSM (Curved DNA-binding protein OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRR-----GNRRYSSEFED 460
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   SR+     G    + +F+D
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDD 96          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_ECOLU (Curved DNA-binding protein OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRR-----GNRRYSSEFED 460
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   SR+     G    + +F+D
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDD 96          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_ECO7I (Curved DNA-binding protein OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRR-----GNRRYSSEFED 460
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   SR+     G    + +F+D
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDD 96          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_ECO5E (Curved DNA-binding protein OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRR-----GNRRYSSEFED 460
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   SR+     G    + +F+D
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDD 96          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_ECO57 (Curved DNA-binding protein OS=Escherichia coli O157:H7 GN=cbpA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRR-----GNRRYSSEFED 460
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   SR+     G    + +F+D
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFSRQFQHGDGQSFNAEDFDD 96          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_LISW6 (Chaperone protein dnaJ OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 32/63 (50.79%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLG+++SA+  +IK+AYR L+++YHPD++K++ A E FK I  AYEVLS+   R +YD+
Sbjct:    5 DYYEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEVLSDSQKRAQYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_DICT6 (Chaperone protein dnaJ OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 34/63 (53.97%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y++LGV ++AT  +IK+AYR L R+YHPD++KD  A E FK I  AYEVLS+   R +YD+
Sbjct:    6 DYYEILGVPRNATQDEIKQAYRRLVRQYHPDLNKDPSAHEKFKEINEAYEVLSDPQKRAQYDQ 68          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_BACP2 (Chaperone protein dnaJ OS=Bacillus pumilus (strain SAFR-032) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 31/63 (49.21%), Postives = 51/63 (80.95%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLGV++SA+  +IK+AYR L++KYHPD++K++ + E FK ++ AYE LS++  R +YD+
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEAGSDEKFKEVKEAYETLSDDQKRSQYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DJC16_PONAB (DnaJ homolog subfamily C member 16 OS=Pongo abelii GN=DNAJC16 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 35/63 (55.56%), Postives = 47/63 (74.60%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D YKVLGV+++A+ ADIK+AY+ LAR++HPD +KD  A + F  I  AYE+LSNE  R  YD+
Sbjct:   29 DPYKVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDKFIQISKAYEILSNEEKRSNYDQ 91          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DJC16_CHICK (DnaJ homolog subfamily C member 16 OS=Gallus gallus GN=DNAJC16 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.861e-12
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  194 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            E D Y+VLGV +S++ ADIK+AY+ LAR++HPD +KD  A + F  I  AYE+LSNE  R  +DR
Sbjct:   26 ERDPYRVLGVGRSSSQADIKKAYKRLARQWHPDKNKDPGAEDKFIQISKAYEILSNEEKRANFDR 90          
The following BLAST results are available for this feature:
BLAST of CX295556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
CBPA_ECOSM6.019e-1243.48Curved DNA-binding protein OS=Escherichia coli (st... [more]
CBPA_ECOLU6.019e-1243.48Curved DNA-binding protein OS=Escherichia coli O17... [more]
CBPA_ECO7I6.019e-1243.48Curved DNA-binding protein OS=Escherichia coli O7:... [more]
CBPA_ECO5E6.019e-1243.48Curved DNA-binding protein OS=Escherichia coli O15... [more]
CBPA_ECO576.019e-1243.48Curved DNA-binding protein OS=Escherichia coli O15... [more]
DNAJ_LISW67.861e-1250.79Chaperone protein dnaJ OS=Listeria welshimeri sero... [more]
DNAJ_DICT67.861e-1253.97Chaperone protein dnaJ OS=Dictyoglomus thermophilu... [more]
DNAJ_BACP27.861e-1249.21Chaperone protein dnaJ OS=Bacillus pumilus (strain... [more]
DJC16_PONAB7.861e-1255.56DnaJ homolog subfamily C member 16 OS=Pongo abelii... [more]
DJC16_CHICK7.861e-1253.85DnaJ homolog subfamily C member 16 OS=Gallus gallu... [more]

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Properties
Property NameValue
Genbank descriptionC05073E01SK DroRLeaf1 Citrus clementina cDNA clone C05073E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295556 ID=CX295556; Name=CX295556; organism=Citrus clementina; type=EST; length=715bp
GAGGCTCCTGGTGGGACCCATAACTCCCACTACCGGCTCCGATGCGTTCT
CCTCCATCATCAAAAACAGTTTCCTGATCTCCTCTCCTCGCCGCAGCACC
ACCGGCAGTAACCGCAACAGAAGAACCCGCCACCGCTTGGTGGTCGCGTC
ATCGTCTTGGTCATCATCCGCCGCGGCGGCGGCCATAAACGGCGAGCCGG
ACCATTACAAAGTTCTGGGCGTCGCTCAAAGTGCCACGCTAGCTGATATT
AAGAGGGCTTATCGCCTCCTCGCTCGTAAGTATCATCCCGACGTTAGCAA
GGATTCACGAGCGGTTGAAGTGTTCAAGACCATCCGTTGTGCTTATGAAG
TATTATCTAATGAAGTAACAAGAATTAAGTATGATCGGGCACTCAAATTT
CGAACGGATAGTGACAGATCACGTAGAGGAAACAGGAGGTACAGCAGTGA
ATTTGAAGACGGGGTAAGGATCTCTACATGGGCTGAACTGAGGCGAAAAC
TTCAATATGAGAGATATTGGAAAAATTATAACTCAAAAGAAGAGTATTCT
TCCTTCTATCGTAAAGCACCAGTCCGGGAAGTTCAAGAGGAAAACCCAGG
TGATAAGAGAGGCTCCTTTACTGCAGTGCTAAGATCAGCATTTATCTCTT
TATTCTTACTGAAGGTCTTTGGGTCCCAACTATCCCTCACTTTTAGTAGC
CTCACGGCTTTGTTT
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