CX295556

Overview
NameCX295556
Unique NameCX295556
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_STACT (Chaperone protein dnaJ OS=Staphylococcus carnosus (strain TM300) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLGV++ A+  +IK+AYR L++KYHPD++++  A E FK I  AYEVLS+E  R  YD+
Sbjct:    5 DYYEVLGVSKDASKDEIKKAYRKLSKKYHPDINQEEGAEEKFKEISEAYEVLSDENKRANYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_LACRJ (Chaperone protein dnaJ OS=Lactobacillus reuteri (strain JCM 1112) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  194 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            E D+Y +LGV++ A+  DIKRAYR LA KYHPDV+ +  A E FK I  AYE LS+   R +YD+
Sbjct:    3 EQDYYDILGVSKDASEKDIKRAYRRLAAKYHPDVNHEPGAEEKFKKINEAYETLSDSQKRAQYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_LACRD (Chaperone protein dnaJ OS=Lactobacillus reuteri (strain DSM 20016) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 35/65 (53.85%), Postives = 45/65 (69.23%), Query Frame = 2
Query:  194 EPDHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            E D+Y +LGV++ A+  DIKRAYR LA KYHPDV+ +  A E FK I  AYE LS+   R +YD+
Sbjct:    3 EQDYYDILGVSKDASEKDIKRAYRRLAAKYHPDVNHEPGAEEKFKKINEAYETLSDSQKRAQYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_BRECH (Chaperone protein dnaJ OS=Brevibacillus choshinensis GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 34/63 (53.97%), Postives = 46/63 (73.02%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLGV + A   +IK+AYR LAR+YHPDV+K + A E FK ++ AY+VLS    R +YDR
Sbjct:    4 DYYEVLGVGKGADADEIKKAYRKLARQYHPDVNKAADAEEKFKEVKEAYDVLSEPQKRAQYDR 66          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_BACSU (Chaperone protein dnaJ OS=Bacillus subtilis GN=dnaJ PE=2 SV=3)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 31/63 (49.21%), Postives = 50/63 (79.37%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLGV++SA+  +IK+AYR L++KYHPD++K++ + E FK ++ AYE LS++  R  YD+
Sbjct:    5 DYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEAGSDEKFKEVKEAYETLSDDQKRAHYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: CBPA_CITK8 (Curved DNA-binding protein OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=cbpA PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDRALKFRTDSDRSRR-----GNRRYSSEFED 460
            D+Y ++GV  +  L  IK AYR LARKYHPDVSK+  A   FK +  A+EVLS+E  R +YD+  + R D   +R+     G    + +F+D
Sbjct:    5 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQGEGQSYNAEDFDD 96          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAW (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MW2) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLG+++ A+  +IK+AYR L++KYHPD++K+  A E FK I  AYEVLS++  R  YD+
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAT (Chaperone protein dnaJ OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLG+++ A+  +IK+AYR L++KYHPD++K+  A E FK I  AYEVLS++  R  YD+
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAS (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MSSA476) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLG+++ A+  +IK+AYR L++KYHPD++K+  A E FK I  AYEVLS++  R  YD+
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67          
BLAST of CX295556 vs. ExPASy Swiss-Prot
Match: DNAJ_STAAR (Chaperone protein dnaJ OS=Staphylococcus aureus (strain MRSA252) GN=dnaJ PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 32/63 (50.79%), Postives = 48/63 (76.19%), Query Frame = 2
Query:  200 DHYKVLGVAQSATLADIKRAYRLLARKYHPDVSKDSRAVEVFKTIRCAYEVLSNEVTRIKYDR 388
            D+Y+VLG+++ A+  +IK+AYR L++KYHPD++K+  A E FK I  AYEVLS++  R  YD+
Sbjct:    5 DYYEVLGISKDASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDNKRASYDQ 67          
The following BLAST results are available for this feature:
BLAST of CX295556 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 163
Match NameE-valueIdentityDescription
DNAJ_STACT1.027e-1152.38Chaperone protein dnaJ OS=Staphylococcus carnosus ... [more]
DNAJ_LACRJ1.027e-1153.85Chaperone protein dnaJ OS=Lactobacillus reuteri (s... [more]
DNAJ_LACRD1.027e-1153.85Chaperone protein dnaJ OS=Lactobacillus reuteri (s... [more]
DNAJ_BRECH1.027e-1153.97Chaperone protein dnaJ OS=Brevibacillus choshinens... [more]
DNAJ_BACSU1.027e-1149.21Chaperone protein dnaJ OS=Bacillus subtilis GN=dna... [more]
CBPA_CITK81.027e-1142.39Curved DNA-binding protein OS=Citrobacter koseri (... [more]
DNAJ_STAAW1.341e-1150.79Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAT1.341e-1150.79Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAS1.341e-1150.79Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]
DNAJ_STAAR1.341e-1150.79Chaperone protein dnaJ OS=Staphylococcus aureus (s... [more]

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Properties
Property NameValue
Genbank descriptionC05073E01SK DroRLeaf1 Citrus clementina cDNA clone C05073E01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295556 ID=CX295556; Name=CX295556; organism=Citrus clementina; type=EST; length=715bp
GAGGCTCCTGGTGGGACCCATAACTCCCACTACCGGCTCCGATGCGTTCT
CCTCCATCATCAAAAACAGTTTCCTGATCTCCTCTCCTCGCCGCAGCACC
ACCGGCAGTAACCGCAACAGAAGAACCCGCCACCGCTTGGTGGTCGCGTC
ATCGTCTTGGTCATCATCCGCCGCGGCGGCGGCCATAAACGGCGAGCCGG
ACCATTACAAAGTTCTGGGCGTCGCTCAAAGTGCCACGCTAGCTGATATT
AAGAGGGCTTATCGCCTCCTCGCTCGTAAGTATCATCCCGACGTTAGCAA
GGATTCACGAGCGGTTGAAGTGTTCAAGACCATCCGTTGTGCTTATGAAG
TATTATCTAATGAAGTAACAAGAATTAAGTATGATCGGGCACTCAAATTT
CGAACGGATAGTGACAGATCACGTAGAGGAAACAGGAGGTACAGCAGTGA
ATTTGAAGACGGGGTAAGGATCTCTACATGGGCTGAACTGAGGCGAAAAC
TTCAATATGAGAGATATTGGAAAAATTATAACTCAAAAGAAGAGTATTCT
TCCTTCTATCGTAAAGCACCAGTCCGGGAAGTTCAAGAGGAAAACCCAGG
TGATAAGAGAGGCTCCTTTACTGCAGTGCTAAGATCAGCATTTATCTCTT
TATTCTTACTGAAGGTCTTTGGGTCCCAACTATCCCTCACTTTTAGTAGC
CTCACGGCTTTGTTT
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