CX295559

Overview
NameCX295559
Unique NameCX295559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS7_NICAL (Ribonuclease S-7 OS=Nicotiana alata PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 64/203 (31.53%), Postives = 95/203 (46.80%), Query Frame = 3
Query:  117 ILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSG---NGITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPD-GSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASN 713
            +L  L F+  LS +  A  F++   VLQWP ++C T      P       +F IHGLWP+ N  +  + C     F   +    +  + K WP L            FW HE+ KHG C     N+ QYF  A+ LK++  LL +LR  GI+P  G  Y+++ I   IK+ +   P + C     G  +L +I +C D+   N
Sbjct:    9 VLFVLLFV--LSPIYGA--FEYMQLVLQWPTAFCHTTPCKRIPN------NFTIHGLWPD-NVSTTLNYCAAKENFKNIEDDTKKDDLYKRWPDLTTAETYCKQHQNFWRHEYNKHGKCCSESYNREQYFDLAMALKDKFDLLSSLRNHGIIPGRGMKYTVQKINSTIKKITQGYPNLSCT---KGIMELVEIGICFDSMVKN 197          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS11_NICAL (Ribonuclease S-F11 OS=Nicotiana alata PE=1 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.339e-21
Identity = 63/184 (34.24%), Postives = 95/184 (51.63%), Query Frame = 3
Query:  171 NFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGIT---FWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASN 713
            +F++   VL WP S+C  A  C          +F IHGLWP+ N  +   NC P   +       + + + K+W  L      G T    W +++ KHG+C +   NQ+ YF  AL LK++  LL+ L+T  I+P GSSY+ + I DAIK  S  +P I+C     G  +LY+I +C   +A +
Sbjct:    1 DFEYLQLVLTWPASFC-YANHCERIAPN----NFTIHGLWPD-NVKTRLHNCKPKPTYSYFT-GKMLNDLDKHWMQLKFEQDYGRTEQPSWKYQYIKHGSCCQKRYNQNTYFGLALRLKDKFDLLRTLQTHRIIP-GSSYTFQDIFDAIKTVSQENPDIKCAEVTKGTPELYEIGICFTPNADS 176          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNT2_MOUSE (Ribonuclease T2 OS=Mus musculus GN=Rnaset2 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 59/170 (34.71%), Postives = 87/170 (51.18%), Query Frame = 3
Query:  201 WPGSYCDTAKSCCYPTTGKPAADFG-IHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCS---ESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNS--QLYQIYLC 692
            WP + C    SC      + + D+  IHGLWP+  +     +C+ +  F+  +I DL   M+  WP +   S N   FW HEW KHGTC+   +++ ++ +YF  +L+L  QI L   L+  GI P  + Y L   KDA+    G  P I+C + E G S   + QI LC
Sbjct:   48 WPPTVCKEVNSC------QDSLDYWTIHGLWPDRAE-----DCNQSWHFNLDEIKDLLRDMKIYWPDVIHRSSNRSQFWKHEWVKHGTCAAQVDALNSEKKYFGKSLDLYKQIDLNSVLQKFGIKPSINYYQLADFKDALTRIYGVVPKIQCLMPEQGESVQTVGQIELC 206          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNT2_HUMAN (Ribonuclease T2 OS=Homo sapiens GN=RNASET2 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.053e-20
Identity = 58/174 (33.33%), Postives = 89/174 (51.15%), Query Frame = 3
Query:  192 VLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCS---ESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIEC---NVDESGNSQLYQIYLCV 695
            V  WP + C+  ++ C      P   + IHGLWP+ ++G     C+ + PF+  +I DL   M+  WP +     N   FW HEWEKHGTC+   +++ +Q +YF  +L L  ++ L   L   GI P  + Y +   KDA+    G  P I+C   + DE   + + QI LC+
Sbjct:   40 VQHWPETVCEKIQNDCRD----PPDYWTIHGLWPDKSEG-----CNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPSQDEEVQT-IGQIELCL 203          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS2_NICAL (Ribonuclease S-2 OS=Nicotiana alata GN=S-2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.349e-19
Identity = 59/201 (29.35%), Postives = 100/201 (49.75%), Query Frame = 3
Query:  120 LIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGI---TFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASN 713
            L  +FFI   ++      F++   VL WP ++C   K C      +   +F IHGLWP+ N  +  + CD + P++       ++ + + WP L     + +    FW  E+ KHGTC     ++ QYF  A+ L+++  LL +LR  GI   G SY+++++ + IK  +G  P + C    S   +L +I +C D +  N
Sbjct:    6 LTSVFFILLCALSPIYGAFEYMQLVLTWPITFC-RIKHC-----ERTPTNFTIHGLWPD-NHTTMLNYCDRSKPYNMFTDGKKKNDLDERWPDLTKTKFDSLDKQAFWKDEYVKHGTCCSDKFDREQYFDLAMTLRDKFDLLSSLRNHGI-SRGFSYTVQNLNNTIKAITGGFPNLTC----SRLRELKEIGICFDETVKN 194          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS3_PETHY (Ribonuclease S-3 OS=Petunia hybrida GN=S3 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.125e-19
Identity = 61/204 (29.90%), Postives = 100/204 (49.02%), Query Frame = 3
Query:  108 FSIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGIT---FWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKE-ASGFSPWIECNVDESGNSQLYQIYLCVDTSA 707
            F + LI  FFI   S+   + NFD+F  VL WP S+C     C      + + +F IHGLWP          C  +      +  ++ + ++++W  +        T    W HE+ +HG C +++ +Q  YF  A+ LK+++ LL  LRT GI P G+ ++   I+ AIK   S   P ++C  +  G  +L +I +C   +A
Sbjct:    2 FRLQLISAFFILLFSLSPVSANFDYFQLVLTWPASFCYPKNKC-----QRRSNNFTIHGLWPEKKRFRLEF-CTGDKYKRFLEEDNIINVLERHWIQMRFDETYANTKQPLWEHEYNRHGICCKNLYDQKAYFLLAMRLKDKLDLLTTLRTHGITP-GTKHTFGEIQKAIKTVTSNNDPDLKCVENIKGVMELNEIGICYTPAA 198          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS2_SOLTU (Ribonuclease S-2 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.693e-19
Identity = 60/201 (29.85%), Postives = 94/201 (46.77%), Query Frame = 3
Query:  120 LIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGIT---FWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASN 713
            L+   F+ + S+     +FD+   VL WP S+C     C       P  +F IHGLWP+            +  + +     +  ++  +W  L      GI     W  +++KHGTC     NQ QYF  A+ LK +  LL  LRT GI P G+ ++ + I+DAIK  +   P ++C  +  G  +LY+I +C    A +
Sbjct:    6 LVSALFVFFFSLSPIYGDFDYMQLVLTWPRSFCYPRGFC----NRIPPNNFTIHGLWPDKKPMRGQLQFCTSDDYIKFTPGSVLDALDHHWIQLKFEREIGIRDQPLWKDQYKKHGTCCLPRYNQLQYFLLAMRLKEKFDLLTTLRTHGITP-GTKHTFKKIQDAIKTVTQEVPDLKCVENIQGVLELYEIGICFTPEADS 201          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNT2_PIG (Ribonuclease T2 OS=Sus scrofa GN=RNASET2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.741e-19
Identity = 59/174 (33.91%), Postives = 89/174 (51.15%), Query Frame = 3
Query:  192 VLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGN-GITFWSHEWEKHGTCS---ESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGN--SQLYQIYLCV 695
            V  WP + C+  K+C +P        + IHGLWP+ +       C+ + PF+  +I  L   M+  WP +   S N  + FW HEWEKHGTC+   +++ +Q +YF   L+L  ++ L   L+  GI P  S Y +  IK A+    G  P ++C   +SG     L QI LC+
Sbjct:    9 VHHWPMTVCNE-KNCEHPPDY-----WTIHGLWPDKS-----GECNRSWPFNPDEIKGLLPDMRLYWPDVLHSSPNHSVHFWRHEWEKHGTCAAQLDALNSQRKYFGKTLDLYKELALNSTLQKLGIKPSISYYQISDIKHALVGVYGVVPKVQCLPPKSGEKVQTLGQIELCL 171          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS6_NICAL (Ribonuclease S-6 OS=Nicotiana alata PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.142e-18
Identity = 58/205 (28.29%), Postives = 101/205 (49.27%), Query Frame = 3
Query:  108 FSIILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGI---TFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASN 713
            F++ L  +F I   ++      F++   VLQWP ++C T      P+      +F IHGLWP+ N  +  + C     ++       ++ +   WP L     + +    FW  E+ KHGTC   + NQ QYF+ A+ LK++  LL +L+  GI+  G  Y+++ I + IK  +   P + C    +   +L+ + +C D++A N
Sbjct:    2 FNLPLTSVFVIFLFALSPIYGAFEYMQLVLQWPTAFCHTTPCKNIPS------NFTIHGLWPD-NVSTTLNFCGKEDDYNIIMDGPEKNGLYVRWPDLIREKADCMKTQNFWRREYIKHGTCCSEIYNQVQYFRLAMALKDKFDLLTSLKNHGII-RGYKYTVQKINNTIKTVTKGYPNLSC----TKGQELWFVGICFDSTAKN 194          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS2_ANTHI (Ribonuclease S-2 OS=Antirrhinum hispanicum GN=S2 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 66/209 (31.58%), Postives = 100/209 (47.85%), Query Frame = 3
Query:   99 KRQFSIILIKLFFIQYLSVLCAARN--FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYP-SNCDPNAPFDQSQISD--LRSSMQKNWPTLACPSGN--GITFWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTS 704
            K Q S   + +  I +LS  C+     FD+F  VLQWP SYC    + C P T  P+  F IHGLWP+  + S+P SNC   +  D  +I+D  L   +  +WP L        G  FW  +W+KHG C+  + + + YF  AL LK + ++L  L    + P      +  +  AI + +G    ++C         L ++ +C D S
Sbjct:    6 KSQHSHFFLLVGCIVHLSNFCSTTTAQFDYFKLVLQWPNSYCSLKTTHC-PRTRLPS-QFTIHGLWPD--NKSWPLSNCRDTSA-DVLKITDKGLIQDLAVHWPDLTRRQRKVPGQKFWVTQWKKHGACALPMYSFNDYFVKALELKKRNNVLDMLSRKSLTPGDQRVDVSDVNGAITKVTGGIAILKC-----PEGYLTEVIICFDPS 204          
The following BLAST results are available for this feature:
BLAST of CX295559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RNS7_NICAL9.339e-2131.53Ribonuclease S-7 OS=Nicotiana alata PE=1 SV=1[more]
RNS11_NICAL9.339e-2134.24Ribonuclease S-F11 OS=Nicotiana alata PE=1 SV=1[more]
RNT2_MOUSE6.053e-2034.71Ribonuclease T2 OS=Mus musculus GN=Rnaset2 PE=2 SV... [more]
RNT2_HUMAN6.053e-2033.33Ribonuclease T2 OS=Homo sapiens GN=RNASET2 PE=1 SV... [more]
RNS2_NICAL1.349e-1929.35Ribonuclease S-2 OS=Nicotiana alata GN=S-2 PE=1 SV... [more]
RNS3_PETHY5.125e-1929.90Ribonuclease S-3 OS=Petunia hybrida GN=S3 PE=3 SV=... [more]
RNS2_SOLTU6.693e-1929.85Ribonuclease S-2 OS=Solanum tuberosum PE=2 SV=1[more]
RNT2_PIG8.741e-1933.91Ribonuclease T2 OS=Sus scrofa GN=RNASET2 PE=1 SV=1[more]
RNS6_NICAL1.142e-1828.29Ribonuclease S-6 OS=Nicotiana alata PE=1 SV=2[more]
RNS2_ANTHI1.491e-1831.58Ribonuclease S-2 OS=Antirrhinum hispanicum GN=S2 P... [more]

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Properties
Property NameValue
Genbank descriptionC05073E04SK DroRLeaf1 Citrus clementina cDNA clone C05073E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295559 ID=CX295559; Name=CX295559; organism=Citrus clementina; type=EST; length=721bp
GGCTTCTTCTATCATAGATACATTCAAAACCATTGTCGATCTCCCTCCCA
AAAATTAATATTGATTTTACTATTGGCACTTTGAGAATTATGGAGTCCAA
GCGCCAGTTTTCAATAATCTTGATCAAACTTTTCTTCATTCAGTATCTAT
CAGTTCTTTGTGCTGCCCGGAACTTCGATTTCTTCTACTTTGTCCTGCAG
TGGCCAGGATCATACTGTGATACAGCGAAGAGTTGCTGCTATCCAACGAC
TGGAAAGCCAGCAGCAGATTTCGGGATTCATGGACTCTGGCCTAATTACA
ACGATGGCTCCTATCCATCCAACTGTGACCCCAATGCCCCTTTCGATCAA
TCCCAGATATCAGACCTGCGAAGCAGCATGCAAAAGAACTGGCCAACACT
GGCTTGCCCAAGCGGGAACGGCATAACATTTTGGTCCCATGAATGGGAGA
AACACGGCACTTGCTCTGAGTCTGTGCTTAACCAACACCAGTACTTTCAA
ACAGCTCTTAACCTGAAAAATCAAATCCATCTCCTCCAAGCTCTCAGAAC
CGCAGGAATAGTGCCTGACGGGAGTTCGTACAGCTTGGAAAGCATCAAGG
ATGCGATAAAAGAAGCAAGTGGGTTCAGTCCATGGATAGAATGCAATGTT
GATGAATCAGGCAACAGCCAGCTTTATCAGATTTACTTGTGTGTCGACAC
TTCTGCCTCTAATTCATCAAC
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