CX295559

Overview
NameCX295559
Unique NameCX295559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS7_PYRPY (Ribonuclease S-7 OS=Pyrus pyrifolia PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 57/200 (28.50%), Postives = 105/200 (52.50%), Query Frame = 3
Query:  117 ILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCS-ESVLNQHQYFQTALN--LKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEA-SGFSPWIECNVDESGNSQLYQIYLCVDTS 704
            I+  +F +  L +  +   +D+F F  Q+  + C++  + C      P   F +HGLWP+  +G +P NC  NA  +  +I ++++ ++  WP +     N + FW+ +W KHG+C   +++N   YFQT +N  +  + ++ + L  A I P G    L  I++AI+ + +   P  +C    SG ++L ++ LC D S
Sbjct:    9 IVTMVFSLIVLILSSSTVGYDYFQFTQQYQPAVCNSKPTPC---KDPPDKLFTVHGLWPSNLNGPHPENC-TNATVNPHRIKNIQAQLKIIWPNV-LDRTNHVGFWNKQWIKHGSCGYPAIMNDTHYFQTVINMYITQKQNVSEILSKAKIEPLGIQRPLVHIENAIRNSTNNKKPKFKCQ-KNSGVTELVEVGLCSDGS 202          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS4_ANTHI (Ribonuclease S-4 OS=Antirrhinum hispanicum GN=S4 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 54/182 (29.67%), Postives = 87/182 (47.80%), Query Frame = 3
Query:  177 DFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGIT--FWSHEWEKHGTCSESVLNQHQYFQTALNLKNQIHLLQALRTAGIVP-DGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYLCVDTSASN 713
            D+   VLQWP S+C      C        ++F IHGLWP+      P +C  N  F +   +D+   M+++WP L   S  G++  FW  +W KHG+C         YF  AL LK+++ +L  L      P     +S+  + + I  A G +P ++C       S L ++ +CVD + ++
Sbjct:   34 DYLKLVLQWPKSFCLINSRKCQ--RNPLPSNFTIHGLWPDNYTRQAPQSCTTNN-FQRFTDTDIEQRMEESWPDLKQQSIAGLSYNFWQDQWRKHGSCCFPPHESEIYFLKALELKDRLDVLTILENNNFNPGTPQPFSVLRVFNTISRAIGKTPILKC-----AQSYLKEVVICVDNNGAS 207          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS3_PYRPY (Ribonuclease S-3 OS=Pyrus pyrifolia PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.380e-16
Identity = 55/203 (27.09%), Postives = 104/203 (51.23%), Query Frame = 3
Query:  120 LIKLFFIQYLSVLCAAR-NFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCS-ESVLNQHQYFQTALN--LKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKE-ASGFSPWIECNVDESGNSQLYQIYLCVDTSASN 713
            ++ + F+  + +LC++   +D+F F  Q+  + C++ ++ C      P   F +HGLWP+   G  PS C       + ++  L   ++  WP +   + N + FW  EW KHG+C   ++ N++ YF+T +   +  + ++ + L  A I PDG   +L  I++AI+  A    P ++C   +   ++L +I LC D S  +
Sbjct:    4 VVMMVFLLIVLILCSSTVGYDYFQFTQQYQLAVCNSNRTLC---KDPPDKLFTVHGLWPSNMVGPDPSKCPIKNIRKREKL--LEHQLEIIWPNVFDRTKNNL-FWDKEWMKHGSCGYPTIDNENHYFETVIKMYISKKQNVSRILSKAKIEPDGKKRALLDIENAIRNGADNKKPKLKCQ-KKGTTTELVEITLCSDKSGEH 199          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS2_PYRPY (Ribonuclease S-2 OS=Pyrus pyrifolia PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 55/200 (27.50%), Postives = 99/200 (49.50%), Query Frame = 3
Query:  117 ILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVL-NQHQYFQTALN--LKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKE-ASGFSPWIECNVDESGNSQLYQIYLCVDTS 704
            I   +F +  L +  +A  +D+F F  Q+  ++C++  + C      P   F +HGLWP+   G  P  C         +I  L   ++  WP ++    N   FW  +W KHG+C+   L NQ  YF+T +   L  + ++ + L  A I P+G + +L  I++AI+   +   P ++C    +G ++L ++ LC D++
Sbjct:    4 IFTMVFSLNVLILSSSAARYDYFQFTQQYQQAFCNSNPTPC---KDPPDKLFTVHGLWPSTKVGRDPEYCKTKR---YRKIQRLEPQLEIIWPNVSDRKANR-GFWRKQWYKHGSCASPALPNQKHYFETVIRMFLAEKQNVSRILSMATIEPEGKNRTLLEIQNAIRAGTNNMIPKLKCQ-KVNGMTELVEVTLCHDSN 195          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS5_PYRPY (Ribonuclease S-5 OS=Pyrus pyrifolia PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 56/203 (27.59%), Postives = 101/203 (49.75%), Query Frame = 3
Query:  117 ILIKLFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCS-ESVLNQHQYFQTALN--LKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKE-ASGFSPWIECNVDESGNSQLYQIYLCVDTSASN 713
            ++  +F +  L +  +   +D+F F  Q+  + C++ ++ C      P   F +HGLWP+   G  PSNC       + ++  L   +   WP +   + N + FW  EW KHGTC   ++ N++ YF+T +   +  + ++ + L  A I PDG   +L  I++AI+  A    P ++C   +   ++L +I LC D S  +
Sbjct:    9 VVTMVFLLIVLILSSSTVGYDYFQFTQQYQLAVCNSNRTPC---KDPPDKLFTVHGLWPSSMAGPDPSNCPIRNIRKREKL--LEPQLAIIWPNVFDRTKNKL-FWDKEWMKHGTCGYPTIDNENHYFETVIKMYISKKQNVSRILSKAKIEPDGKKRALLDIENAIRNGADNKKPKLKCQ-KKGTTTELVEITLCSDKSGEH 204          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS1_PYRPY (Ribonuclease S-1 OS=Pyrus pyrifolia PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.926e-16
Identity = 51/194 (26.29%), Postives = 96/194 (49.48%), Query Frame = 3
Query:  129 LFFIQYLSVLCAARNFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCS-ESVLNQHQYFQTALN--LKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKE-ASGFSPWIECNVDESGNSQLYQIYLCVD 698
            +F +  L +  +   +D+F F  Q+  + C++  + C   T K    F +HGLWP+  +G  P  C   A  +  +I ++ + ++  WP +   S + + FW  EW KHGTC   ++ +   Y QT +   +  + ++   L  A I P+G++  L  I++AI+   +   P  +C  +    ++L ++ LC D
Sbjct:   13 VFSLIVLILSSSTVGYDYFQFTQQYQPAVCNSNPTPCNDPTDKL---FTVHGLWPSNRNGPDPEKCKTTA-LNSQKIGNMTAQLEIIWPNVLNRSDH-VGFWEKEWIKHGTCGYPTIKDDMHYLQTVIRMYITQKQNVSAILSKAAIQPNGTNRPLVDIENAIRRGTNNTKPKFKCQKNTRTTTELVEVTLCSD 201          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNY1A_CANAL (Ribonuclease T2-like 1-A OS=Candida albicans GN=RNY1-A PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.181e-15
Identity = 62/210 (29.52%), Postives = 89/210 (42.38%), Query Frame = 3
Query:  219 DTAKSCCYPTTGK---------------PAADFGIHGLWPNYNDGSYPSNCDPNAPFDQS----------QISD--LRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESV-----------LNQHQYFQTALNLKNQIHLLQALRTAGIVPD-GSSYSLESIKDAIKEASGFSPWIECNVDESGN----------SQLYQIYLCVDT 701
            DT+ SCCY   G                PA  F IH +W +Y  G YP  CD +   D +          Q  D  L  +M K W  +   +GN   FW+HE+ KHGTC  ++            N + Y+     L  ++   Q L +AGI P   ++Y+L  I+ A+K   G   +I C+ + + N          S L Q YL +DT
Sbjct:   37 DTSNSCCYENPGGIILFTQFWDYNPASGPADSFTIHSIWNDYCSGGYPQFCDTSLEIDSTGSTIESIVVDQFGDQTLYDNMNKYWTDI---NGNNKKFWAHEFNKHGTCLNTLNPSCYSNYKQNENVYDYYSLVYQLFQKLPTYQWLVSAGIKPSTTATYTLSQIQSALKSKFGAEVYIACDSNNAINEVWYFYNIKGSILQQNYLPIDT 243          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNRH_RHINI (Ribonuclease Rh OS=Rhizopus niveus PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.632e-15
Identity = 59/183 (32.24%), Postives = 86/183 (46.99%), Query Frame = 3
Query:  231 SCCYPTTGK------------PAADFGIHGLWPNYNDGSY-PSN-CDPN------APFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTC--------------SESVLNQHQYFQTALNLKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLY 677
            +CC P  G             P   F +HGLWP+   G+Y PS  CD N      A   +S+ S L +SM   WP+     GN   FWSHEW KHGTC               E +++   YFQ A++L++Q ++ +A  + GI P G +Y+   ++ AI+   G    I+C+     +  LY
Sbjct:   34 TCCSPEYGLVVLNMQWAPGYGPDNAFTLHGLWPDKCSGAYAPSGGCDSNRASSSIASVIKSKDSSLYNSMLTYWPS---NQGNNNVFWSHEWSKHGTCVSTYDPDCYDNYEEGEDIVD---YFQKAMDLRSQYNVYKAFSSNGITP-GGTYTATEMQSAIESYFGAKAKIDCSSGTLSDVALY 209          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS4_PYRPY (Ribonuclease S-4 OS=Pyrus pyrifolia PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 48/177 (27.12%), Postives = 89/177 (50.28%), Query Frame = 3
Query:  174 FDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCS-ESVLNQHQYFQTALN--LKNQIHLLQALRTAGIVPDGSSYSLESIKDAIKEA-SGFSPWIECNVDESGNSQLYQIYLC 692
            FD+F F  Q+  + C++  + C   T K    F +HGLWP+  +G  P  C      +  +I ++ + ++  WP +   S + + FW  EW KHGTC   ++ +   Y +T +   +  + ++   L  A I P+G++ SL  I++AI+   +   P  +C  +    ++L ++ LC
Sbjct:   28 FDYFQFTQQYQPAVCNSNPTPCNDPTDKL---FTVHGLWPSNRNGPDPEKCKTTT-MNSQKIGNMTAQLEIIWPNVLNRSDH-VGFWEREWLKHGTCGYPTIKDDMHYLKTVIKMYITQKQNVSAILSKATIQPNGNNRSLVDIENAIRSGNNNTKPKFKCQKNTRTTTELVEVTLC 199          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNTR_TRIVI (Ribonuclease Trv OS=Trichoderma viride PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.489e-15
Identity = 51/156 (32.69%), Postives = 77/156 (49.36%), Query Frame = 3
Query:  243 PTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSS---------MQKNWPTLACPSGNGITFWSHEWEKHGTCSESV-----------LNQHQYFQTALNLKNQIHLLQALRTAGIVPDGS-SYSLESIKDAIKEASGFSPWIECN 647
            P+TG P+  + IHGLWP+  DGS+P  CD +  +  + I+D+ ++         MQ  W       GN  +FW HEW KHGTC  ++                +F   ++L   +   Q L  AGI PDGS SY+L+ I+ A+ +  G    + C+
Sbjct:   41 PSTG-PSDSWTIHGLWPDNCDGSFPQTCDASRAY--TNITDILTAMGADDTLQYMQTYWKDY---QGNDESFWEHEWGKHGTCITTLDPGCYDDYVPTEEAADFFSKTVSLFKTLPTYQWLADAGITPDGSKSYALDDIQSALSQQHGAEVTLGCD 190          
The following BLAST results are available for this feature:
BLAST of CX295559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RNS7_PYRPY5.666e-1828.50Ribonuclease S-7 OS=Pyrus pyrifolia PE=1 SV=1[more]
RNS4_ANTHI2.812e-1729.67Ribonuclease S-4 OS=Antirrhinum hispanicum GN=S4 P... [more]
RNS3_PYRPY2.380e-1627.09Ribonuclease S-3 OS=Pyrus pyrifolia PE=1 SV=1[more]
RNS2_PYRPY5.303e-1627.50Ribonuclease S-2 OS=Pyrus pyrifolia PE=1 SV=1[more]
RNS5_PYRPY6.926e-1627.59Ribonuclease S-5 OS=Pyrus pyrifolia PE=1 SV=1[more]
RNS1_PYRPY6.926e-1626.29Ribonuclease S-1 OS=Pyrus pyrifolia PE=1 SV=1[more]
RNY1A_CANAL1.181e-1529.52Ribonuclease T2-like 1-A OS=Candida albicans GN=RN... [more]
RNRH_RHINI2.632e-1532.24Ribonuclease Rh OS=Rhizopus niveus PE=1 SV=1[more]
RNS4_PYRPY3.437e-1527.12Ribonuclease S-4 OS=Pyrus pyrifolia PE=1 SV=2[more]
RNTR_TRIVI4.489e-1532.69Ribonuclease Trv OS=Trichoderma viride PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05073E04SK DroRLeaf1 Citrus clementina cDNA clone C05073E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295559 ID=CX295559; Name=CX295559; organism=Citrus clementina; type=EST; length=721bp
GGCTTCTTCTATCATAGATACATTCAAAACCATTGTCGATCTCCCTCCCA
AAAATTAATATTGATTTTACTATTGGCACTTTGAGAATTATGGAGTCCAA
GCGCCAGTTTTCAATAATCTTGATCAAACTTTTCTTCATTCAGTATCTAT
CAGTTCTTTGTGCTGCCCGGAACTTCGATTTCTTCTACTTTGTCCTGCAG
TGGCCAGGATCATACTGTGATACAGCGAAGAGTTGCTGCTATCCAACGAC
TGGAAAGCCAGCAGCAGATTTCGGGATTCATGGACTCTGGCCTAATTACA
ACGATGGCTCCTATCCATCCAACTGTGACCCCAATGCCCCTTTCGATCAA
TCCCAGATATCAGACCTGCGAAGCAGCATGCAAAAGAACTGGCCAACACT
GGCTTGCCCAAGCGGGAACGGCATAACATTTTGGTCCCATGAATGGGAGA
AACACGGCACTTGCTCTGAGTCTGTGCTTAACCAACACCAGTACTTTCAA
ACAGCTCTTAACCTGAAAAATCAAATCCATCTCCTCCAAGCTCTCAGAAC
CGCAGGAATAGTGCCTGACGGGAGTTCGTACAGCTTGGAAAGCATCAAGG
ATGCGATAAAAGAAGCAAGTGGGTTCAGTCCATGGATAGAATGCAATGTT
GATGAATCAGGCAACAGCCAGCTTTATCAGATTTACTTGTGTGTCGACAC
TTCTGCCTCTAATTCATCAAC
back to top