CX295559

Overview
NameCX295559
Unique NameCX295559
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length721
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNM_ASPSA (Ribonuclease M OS=Aspergillus saitoi PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.658e-15
Identity = 54/191 (28.27%), Postives = 85/191 (44.50%), Query Frame = 3
Query:  219 DTAKSCCYPTTGK---------------PAADFGIHGLWPNYNDGSYPSNCDPNAPF-------DQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESV-----------LNQHQYFQTALNLKNQIHLLQALRTAGIVP-DGSSYSLESIKDAIKEA-SGFSPWIECNVDESGNSQLYQIY 686
            D   SCC+ + G                P+  + IHGLWP+  DGSY   CD +  +       +    ++L S M++ WP     +    +FW HEW KHGTC  ++                +FQ  ++L   +    AL  AGI P + ++Y L  I+DA+     G+ P++ C  ++   SQLY  +
Sbjct:   16 DNEASCCFNSPGGSLLQTQFWDYDPSDGPSDSWTIHGLWPDNCDGSYQEYCDDSREYSNITSILEAQDRTELLSYMKEYWPDYE-GADEDESFWEHEWNKHGTCINTIDPSCYTDYYAQEEVGDFFQQVVDLFKTLDSYTALSDAGITPSEDATYKLSDIEDALAAIHDGYPPYVGC--EDGALSQLYYYF 203          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNT2_ASPOR (Ribonuclease T2 OS=Aspergillus oryzae GN=rntB PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.706e-14
Identity = 55/189 (29.10%), Postives = 83/189 (43.92%), Query Frame = 3
Query:  225 AKSCCYPTTGK---------------PAADFGIHGLWPNYNDGSYPSNCDPNAPFD-------QSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESV-----------LNQHQYFQTALNLKNQIHLLQALRTAGIVPDGS-SYSLESIKDAIKEA-SGFSPWIECNVDESGNSQLYQIY 686
            A SCC+ + G                P+  + IHGLWP+  DGSY   CD +  +        +   ++L S M+K WP      G+   FW HEW KHGTC  ++                Y Q  ++L   +   +AL  AGIVPD S +Y    I+ A+     G  P+I C  ++   ++++  Y
Sbjct:   37 ADSCCFNSPGGALLQTQFWDTNPPSGPSDSWTIHGLWPDNCDGSYGQFCDKSREYSNITAILQEQGRTELLSYMKKYWPNY---EGDDEEFWEHEWNKHGTCINTIEPSCYKDYSPQKEVGDYLQKTVDLFKGLDSYKALAKAGIVPDSSKTYKRSEIESALAAIHDGKKPYISC--EDGALNEIWYFY 220          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNY1B_CANAL (Ribonuclease T2-like 1-B OS=Candida albicans GN=RNY1-B PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 56/194 (28.87%), Postives = 83/194 (42.78%), Query Frame = 3
Query:  219 DTAKSCCY----------------PTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPF------------DQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESV------------LNQHQYFQTALNLKNQIHLLQALRTAGIVPDGS-SYSLESIKDAIKEASGFSPWIECNVDESGNSQLY 677
            +   SCCY                P TG P   F  HGLW N     YP  CDP+               DQ    +L ++M  +W       G   +FW+HE+ KHGTC  ++             N + +F+ A+ L N++     L  AGIVP  S +YSL  I+ A+ +  G + +I+C+ + + N   Y
Sbjct:   49 ENVNSCCYESPAGVILLTQFWDYNPATG-PDNLFTQHGLWGNMCSYGYPQFCDPSLEINPNGEIIRSIIVDQFGDEELYNNMSYSWKDY---HGKDSSFWAHEYNKHGTCFSTIKPSCYLSNTPKNQNLYDFFRIAIGLFNKLPTYDWLAEAGIVPTNSKTYSLSEIQSALNDKFGANVFIKCDYNHAINEIWY 238          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNS6_PYRPY (Ribonuclease S-6 OS=Pyrus pyrifolia PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12
Identity = 48/201 (23.88%), Postives = 99/201 (49.25%), Query Frame = 3
Query:  114 IILIKLFFIQYLSVLCAAR-NFDFFYFVLQWPGSYCDTAKSCCYPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQISDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSE--SVLNQHQYFQTALN--LKNQIHLLQALRTAGIVPDGSSYSLESIKDAIK-EASGFSPWIECNVDESGNSQLYQIYLCVD 698
            I ++ + F   + + C++   +++F F  Q+  + C++  + C      P   F +HGLWP+ + G  P  C  N      QI +L + +   WP +   + + + FW+ +W KHG+C +  ++ ++  YF+T +   +  + ++ + L  A I P+G     + I +AI+       P ++C  +    ++L +I +C D
Sbjct:    7 IYMVPMVFSLIVLISCSSTMGYNYFQFTQQYQPAVCNSNPTPC---KDPPDKLFTVHGLWPSNDVGDDPIYCK-NKTIKSQQIGNLTAQLIIIWPNVLDRTDH-VGFWNRQWNKHGSCGKAPTIKDEMHYFKTVIKMYITQKQNVSEILSRAKIEPEGKIRRRDDIINAIRLGTKDKKPKLKCQKNNQ-TTELVEITICSD 201          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNY1_EMENI (Ribonuclease T2-like OS=Emericella nidulans GN=rny1 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 44/154 (28.57%), Postives = 64/154 (41.56%), Query Frame = 3
Query:  243 PTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQSQI-------SDLRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESVLNQH------------QYFQTALNLKNQIHLLQALRTAGIVPD-GSSYSLESIKDAIKEASGFSPWIEC 644
            P  G P   + IHGLWP++ +G +   CD +  +    +        DL   M   W       G+    W HEW KHGTC  S L  H             YF   + L + +     L  AGIVP    +Y+   ++DA+ +A G +  + C
Sbjct:   81 PAVG-PENSWTIHGLWPDHCNGGFDQFCDSHRKYSNISLILIDAGRRDLLDEMSTYWKDYR---GDDPNLWEHEWNKHGTC-VSTLETHCYSEYYPQQEVVDYFDKTVELFHDLPTYMTLANAGIVPSYTQTYTRHEVEDALSKAHGATVTVRC 229          
BLAST of CX295559 vs. ExPASy Swiss-Prot
Match: RNY1_DEBHA (Ribonuclease T2-like OS=Debaryomyces hansenii GN=RNY1 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.708e-11
Identity = 48/172 (27.91%), Postives = 75/172 (43.60%), Query Frame = 3
Query:  240 YPTTGKPAADFGIHGLWPNYNDGSYPSNCDPNAPFDQ------SQISD--LRSSMQKNWPTLACPSGNGITFWSHEWEKHGTCSESV-------------LNQHQYFQTALNLKNQIHLLQALRTAGIVPD-GSSYSLESIKDAIKEASGFSPWIECNVDESGNSQLYQIYL 689
            YP  G   + F +HGLWP+  DG+Y   CD +           +Q  D  L   M + W      +GN  + W HE+ KH TC +++              N + ++   +NL  ++   Q L   GIVP     YS + I DA+ +  G + + +CN  ++     Y  YL
Sbjct:   72 YPPIGGNES-FTLHGLWPDNCDGTYEQFCDDSLNIRSATDIVLNQFGDKVLYGKMSEFWKNF---NGNDESLWIHEFNKHATCVKTIRPTCYDNQRYVKNKNVYDFYNITMNLYEKLPTFQFLAAEGIVPSLTQKYSKKQINDALTKYFGKAVYFKCNKYKALQEVWYYHYL 239          
The following BLAST results are available for this feature:
BLAST of CX295559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RNM_ASPSA7.658e-1528.27Ribonuclease M OS=Aspergillus saitoi PE=1 SV=1[more]
RNT2_ASPOR1.706e-1429.10Ribonuclease T2 OS=Aspergillus oryzae GN=rntB PE=1... [more]
RNY1B_CANAL4.964e-1428.87Ribonuclease T2-like 1-B OS=Candida albicans GN=RN... [more]
RNS6_PYRPY2.085e-1223.88Ribonuclease S-6 OS=Pyrus pyrifolia PE=1 SV=1[more]
RNY1_EMENI3.933e-1128.57Ribonuclease T2-like OS=Emericella nidulans GN=rny... [more]
RNY1_DEBHA6.708e-1127.91Ribonuclease T2-like OS=Debaryomyces hansenii GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC05073E04SK DroRLeaf1 Citrus clementina cDNA clone C05073E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295559 ID=CX295559; Name=CX295559; organism=Citrus clementina; type=EST; length=721bp
GGCTTCTTCTATCATAGATACATTCAAAACCATTGTCGATCTCCCTCCCA
AAAATTAATATTGATTTTACTATTGGCACTTTGAGAATTATGGAGTCCAA
GCGCCAGTTTTCAATAATCTTGATCAAACTTTTCTTCATTCAGTATCTAT
CAGTTCTTTGTGCTGCCCGGAACTTCGATTTCTTCTACTTTGTCCTGCAG
TGGCCAGGATCATACTGTGATACAGCGAAGAGTTGCTGCTATCCAACGAC
TGGAAAGCCAGCAGCAGATTTCGGGATTCATGGACTCTGGCCTAATTACA
ACGATGGCTCCTATCCATCCAACTGTGACCCCAATGCCCCTTTCGATCAA
TCCCAGATATCAGACCTGCGAAGCAGCATGCAAAAGAACTGGCCAACACT
GGCTTGCCCAAGCGGGAACGGCATAACATTTTGGTCCCATGAATGGGAGA
AACACGGCACTTGCTCTGAGTCTGTGCTTAACCAACACCAGTACTTTCAA
ACAGCTCTTAACCTGAAAAATCAAATCCATCTCCTCCAAGCTCTCAGAAC
CGCAGGAATAGTGCCTGACGGGAGTTCGTACAGCTTGGAAAGCATCAAGG
ATGCGATAAAAGAAGCAAGTGGGTTCAGTCCATGGATAGAATGCAATGTT
GATGAATCAGGCAACAGCCAGCTTTATCAGATTTACTTGTGTGTCGACAC
TTCTGCCTCTAATTCATCAAC
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