CX295565
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP2_MOUSE (Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2) HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25 Identity = 60/171 (35.09%), Postives = 99/171 (57.89%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+ V P +R + +Y+Q+S+H+EL TT+ ++A P +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQY 225
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP2_HUMAN (Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2 PE=1 SV=1) HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25 Identity = 61/169 (36.09%), Postives = 100/169 (59.17%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP---------------NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PS+V+H+R + E++E +++ L PFG +T ++ML+ KNQA L++ +AI + +Y+ V P +R + +Y+Q+S+H+EL T+ Q AQ + P + +L + I +M YP+T++VLHQ+FS G V KI+TF K+ FQAL+QY Sbjct: 57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQY 225
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP1_ARATH (Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 6.102e-23 Identity = 61/147 (41.50%), Postives = 95/147 (64.63%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY-TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PSKV+H+RN+ E E +L+ L + FG I TK + +NQA ++ D+ AI+ + +Y ++ +P IRG+ VY+Q+S+ E+ N Q GD P +LLVT + + ++++V+H VFS GFV KI TF+K+AGFQAL+Q+ Sbjct: 15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQF 157
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP2_ARATH (Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.775e-22 Identity = 59/147 (40.14%), Postives = 96/147 (65.31%), Query Frame = 2 Query: 74 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY-TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH-HMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499 PSKV+H+RN+ E +E +L++L +PFG + TK + +NQA ++ +D+ AI + +Y ++ +P +RG+ VY+Q+S+ QE+ + A D +LLVTI ++++VLH VFS GFV KI TF+K+AG+QAL+Q+ Sbjct: 16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTA----DVVGNVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQF 158
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: HNRLL_MOUSE (Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus GN=Hnrpll PE=1 SV=3) HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18 Identity = 49/145 (33.79%), Postives = 90/145 (62.07%), Query Frame = 2 Query: 77 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 502 S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F +V I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA+++++ Sbjct: 124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT-----RPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFE 262
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: HNRLL_HUMAN (Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens GN=HNRPLL PE=1 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17 Identity = 48/145 (33.10%), Postives = 89/145 (61.38%), Query Frame = 2 Query: 77 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 502 S V+HVR + + E DL++ + FG I ++M+ K QAL++ +++ SA + F + I G+ + +S+ + +T G D+P N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA+++++ Sbjct: 75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRIT-----RPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFE 213
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: HNRPL_MOUSE (Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.003e-17 Identity = 51/150 (34.00%), Postives = 89/150 (59.33%), Query Frame = 2 Query: 68 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 517 T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ + + Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ + +P G V++IV F+K+ G QA++++ SA Sbjct: 95 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSA 241
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: HNRPL_HUMAN (Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 5.003e-17 Identity = 51/150 (34.00%), Postives = 89/150 (59.33%), Query Frame = 2 Query: 68 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 517 T S V+H+R + + E DL++ Q FG I+ +V++ K QAL++ +DV A NA+ + + Q I G +V +S+ Q+++ + R N +LL TI + +Y IT +VL+ + +P G V++IV F+K+ G QA++++ SA Sbjct: 98 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSA 244 The following BLAST results are available for this feature:
BLAST of CX295565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 18
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295565 ID=CX295565; Name=CX295565; organism=Citrus clementina; type=EST; length=636bpback to top |