CX295565

Overview
NameCX295565
Unique NameCX295565
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length636
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP2_MOUSE (Polypyrimidine tract-binding protein 2 OS=Mus musculus GN=Ptbp2 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 60/171 (35.09%), Postives = 99/171 (57.89%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL-----------------------------TTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PS+V+H+R +  E++E +++ L  PFG +T ++ML+ KNQA L++    +AI  + +Y+ V P +R + +Y+Q+S+H+EL                             TT+ ++A      P  +L + I +M YP+T++VLHQ+FS  G V KI+TF K+  FQAL+QY
Sbjct:   57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQVVLQAVTAVQTANTPLSGTTVSESAVTPAQSP--VLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQY 225          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP2_HUMAN (Polypyrimidine tract-binding protein 2 OS=Homo sapiens GN=PTBP2 PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.926e-25
Identity = 61/169 (36.09%), Postives = 100/169 (59.17%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQEL---TTMEQNAQG---------RGDEP---------------NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PS+V+H+R +  E++E +++ L  PFG +T ++ML+ KNQA L++    +AI  + +Y+ V P +R + +Y+Q+S+H+EL    T+ Q AQ            + P               + +L + I +M YP+T++VLHQ+FS  G V KI+TF K+  FQAL+QY
Sbjct:   57 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKELKTDNTLNQRAQAVLQAVTAVQTANTPLSGTTVSESAVTPAQSPVLRIIIDNMYYPVTLDVLHQIFSKFGAVLKIITFTKNNQFQALLQY 225          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP1_ARATH (Polypyrimidine tract-binding protein homolog 1 OS=Arabidopsis thaliana GN=PTB PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.102e-23
Identity = 61/147 (41.50%), Postives = 95/147 (64.63%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY-TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHM-LYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PSKV+H+RN+  E  E +L+ L + FG I  TK  +   +NQA ++  D+  AI+ + +Y ++ +P  IRG+ VY+Q+S+  E+     N Q  GD P  +LLVT   +  + ++++V+H VFS  GFV KI TF+K+AGFQAL+Q+
Sbjct:   15 PSKVVHLRNLPWECVEEELIDLCKRFGKIVNTKSNVGANRNQAFVEFADLNQAISMVSYYASSSEPAQIRGKTVYIQYSNRHEIV----NNQSPGDVPGNVLLVTFEGVESHEVSIDVIHLVFSAFGFVHKIATFEKAAGFQALVQF 157          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: PTBP2_ARATH (Polypyrimidine tract-binding protein homolog 2 OS=Arabidopsis thaliana GN=At5g53180 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.775e-22
Identity = 59/147 (40.14%), Postives = 96/147 (65.31%), Query Frame = 2
Query:   74 PSKVIHVRNVGHEISENDLLQLFQPFGVI--TKLVMLRAKNQALLQMQDVPSAINALQFY-TNVQPT-IRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIH-HMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQY 499
            PSKV+H+RN+  E +E +L++L +PFG +  TK  +   +NQA ++ +D+  AI  + +Y ++ +P  +RG+ VY+Q+S+ QE+   +  A    D    +LLVTI       ++++VLH VFS  GFV KI TF+K+AG+QAL+Q+
Sbjct:   16 PSKVLHLRNLPWECTEEELIELGKPFGTVVNTKCNVGANRNQAFIEFEDLNQAIQMISYYASSSEPAQVRGKTVYLQYSNRQEIVNNKTTA----DVVGNVLLVTIEGDDARMVSIDVLHLVFSAFGFVHKITTFEKTAGYQALVQF 158          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: HNRLL_MOUSE (Heterogeneous nuclear ribonucleoprotein L-like OS=Mus musculus GN=Hnrpll PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 4.525e-18
Identity = 49/145 (33.79%), Postives = 90/145 (62.07%), Query Frame = 2
Query:   77 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 502
            S V+HVR +   + E DL++  + FG I  ++M+  K QAL++ +++ SA   + F  +V   I G+  +  +S+ + +T       G  D+P   N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA+++++
Sbjct:  124 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRIT-----RPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFE 262          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: HNRLL_HUMAN (Heterogeneous nuclear ribonucleoprotein L-like OS=Homo sapiens GN=HNRPLL PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.246e-17
Identity = 48/145 (33.10%), Postives = 89/145 (61.38%), Query Frame = 2
Query:   77 SKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEP---NRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQ 502
            S V+HVR +   + E DL++  + FG I  ++M+  K QAL++ +++ SA   + F  +    I G+  +  +S+ + +T       G  D+P   N++LL++I + LYPITV+VL+ V +P G V++IV F+++ G QA+++++
Sbjct:   75 SPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADEPVYIAGQQAFFNYSTSKRIT-----RPGNTDDPSGGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRN-GIQAMVEFE 213          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: HNRPL_MOUSE (Heterogeneous nuclear ribonucleoprotein L OS=Mus musculus GN=Hnrnpl PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.003e-17
Identity = 51/150 (34.00%), Postives = 89/150 (59.33%), Query Frame = 2
Query:   68 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 517
            T  S V+H+R +   + E DL++  Q FG I+ +V++  K QAL++ +DV  A NA+ +  + Q  I G   +V +S+ Q+++    +   R    N +LL TI + +Y IT +VL+ + +P G V++IV F+K+ G QA++++    SA
Sbjct:   95 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSA 241          
BLAST of CX295565 vs. ExPASy Swiss-Prot
Match: HNRPL_HUMAN (Heterogeneous nuclear ribonucleoprotein L OS=Homo sapiens GN=HNRNPL PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.003e-17
Identity = 51/150 (34.00%), Postives = 89/150 (59.33%), Query Frame = 2
Query:   68 TEPSKVIHVRNVGHEISENDLLQLFQPFGVITKLVMLRAKNQALLQMQDVPSAINALQFYTNVQPTIRGRNVYVQFSSHQELTTMEQNAQGRGDEPNRILLVTIHHMLYPITVEVLHQVFSPHGFVEKIVTFQKSAGFQALIQYQLRPSA 517
            T  S V+H+R +   + E DL++  Q FG I+ +V++  K QAL++ +DV  A NA+ +  + Q  I G   +V +S+ Q+++    +   R    N +LL TI + +Y IT +VL+ + +P G V++IV F+K+ G QA++++    SA
Sbjct:   98 TPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQKISRPGDSDDSR--SVNSVLLFTILNPIYSITTDVLYTICNPCGPVQRIVIFRKN-GVQAMVEFDSVQSA 244          
The following BLAST results are available for this feature:
BLAST of CX295565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
PTBP2_MOUSE2.926e-2535.09Polypyrimidine tract-binding protein 2 OS=Mus musc... [more]
PTBP2_HUMAN2.926e-2536.09Polypyrimidine tract-binding protein 2 OS=Homo sap... [more]
PTBP1_ARATH6.102e-2341.50Polypyrimidine tract-binding protein homolog 1 OS=... [more]
PTBP2_ARATH1.775e-2240.14Polypyrimidine tract-binding protein homolog 2 OS=... [more]
HNRLL_MOUSE4.525e-1833.79Heterogeneous nuclear ribonucleoprotein L-like OS=... [more]
HNRLL_HUMAN2.246e-1733.10Heterogeneous nuclear ribonucleoprotein L-like OS=... [more]
HNRPL_MOUSE5.003e-1734.00Heterogeneous nuclear ribonucleoprotein L OS=Mus m... [more]
HNRPL_HUMAN5.003e-1734.00Heterogeneous nuclear ribonucleoprotein L OS=Homo ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05073E10SK DroRLeaf1 Citrus clementina cDNA clone C05073E10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295565 ID=CX295565; Name=CX295565; organism=Citrus clementina; type=EST; length=636bp
TCATTCACTTCTAATTTTTCTCCCTCTCTCTCCTCTCTTCCTCTCTGTCT
CAGTGTGATTTAAGATGACAGAGCCGTCCAAGGTTATTCACGTTCGCAAT
GTGGGACACGAGATTTCTGAAAATGATTTACTTCAGCTATTCCAACCATT
TGGAGTCATAACTAAGCTTGTGATGCTTCGTGCAAAAAATCAGGCTCTTC
TCCAAATGCAAGATGTTCCTTCAGCCATCAATGCTCTGCAATTTTACACG
AATGTGCAGCCAACCATCAGGGGAAGGAATGTTTATGTCCAATTTTCATC
ACATCAGGAACTAACAACAATGGAACAGAATGCTCAAGGACGAGGTGATG
AGCCGAACCGAATTCTCTTAGTTACAATTCATCACATGCTTTATCCTATT
ACTGTGGAAGTGCTGCATCAAGTTTTTTCTCCTCATGGATTTGTGGAAAA
GATCGTCACATTCCAGAAGTCAGCTGGATTTCAAGCACTTATCCAGTATC
AATTACGTCCGAGTGCTGTTGTACTAGAATTCTCTTCAGGCGTAATATTT
ATGATGGTGCTGTCACTGGACATTCATTCTCAACCTTGATGAGTACAGTG
ACTACATATGAGCGATCAGGGACTCCAATCAATCTT
back to top