CX295574
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11 Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 197 V+IFD DWNP D+QA+ RA RIGQK+ V +YRL+T+G++EE + R K L + +++ Sbjct: 879 VVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 938
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: CHD1_CHICK (Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus GN=CHD1 PE=1 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11 Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 3 Query: 18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 197 V+IFD DWNP D+QA+ RA RIGQK+ V +YRL+T+G++EE + R K L + +++ Sbjct: 875 VVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 934
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: SWR1_SCHPO (Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1 PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11 Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 3 Query: 18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLND--------DGNGGSTE 284 VI +D DWNP D QA++R+ RIGQ +DV +YRLI+ T+E + R K L +++ + +F+ ++ DLF L+D D + GST+ Sbjct: 1081 VIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEFTTEWFRKADVLDLFDLDDESLKKVKADSDSGSTK 1178
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_SCLS1 (Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11 Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 3 Query: 18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 170 VI +D DWNP+ D QA +RA R+GQ + VTVYR+ITRGTIEE++ R + K Sbjct: 1512 VIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRMITRGTIEERIRKRALQK 1562
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2) HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11 Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 3 Query: 18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL 194 VI ++ DWNP+ D+QA +RA R+GQ +DVTVYRLI + T+EEK+ HR K+ + ++ Sbjct: 1296 VIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKNTVQQLVM 1354
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11 Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 3 Query: 18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK--------NPQQRRFF 221 VIIFD DWNP D+QA++RA RIGQ ++V +YRLIT ++EE + R YK + K+++ P++R F Sbjct: 827 VIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAF 902
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: MOT1_YEAST (TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae GN=MOT1 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11 Identity = 37/115 (32.17%), Postives = 61/115 (53.04%), Query Frame = 3 Query: 18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTL----------NDDGNGGSTETSNIFSQLSEDVNVVG 332 VI + DWNP D+QA +RA RIGQK+ V VYR+IT+GT+EEK+ Q +K + + ++ QQ + + L L N++ N G ++ + ++ + + G Sbjct: 1723 VIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVN--QQNSGLASMDTHQLLDLFDPDNVTSQDNEEKNNGDSQAAKGMEDIANETGLTG 1835 The following BLAST results are available for this feature:
BLAST of CX295574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 47
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295574 ID=CX295574; Name=CX295574; organism=Citrus clementina; type=EST; length=662bpback to top |