CX295574

Overview
NameCX295574
Unique NameCX295574
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length662
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: CHD1_HUMAN (Chromodomain-helicase-DNA-binding protein 1 OS=Homo sapiens GN=CHD1 PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 197
            V+IFD DWNP  D+QA+ RA RIGQK+ V +YRL+T+G++EE +  R   K  L + +++
Sbjct:  879 VVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 938          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: CHD1_CHICK (Chromodomain-helicase-DNA-binding protein 1 OS=Gallus gallus GN=CHD1 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.767e-11
Identity = 29/60 (48.33%), Postives = 43/60 (71.67%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK 197
            V+IFD DWNP  D+QA+ RA RIGQK+ V +YRL+T+G++EE +  R   K  L + +++
Sbjct:  875 VVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGSVEEDILERAKKKMVLDHLVIQ 934          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: SWR1_SCHPO (Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 36/98 (36.73%), Postives = 56/98 (57.14%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQ-QRRFFKARNMKDLFTLND--------DGNGGSTE 284
            VI +D DWNP  D QA++R+ RIGQ +DV +YRLI+  T+E  +  R   K  L   +++  +    +F+  ++ DLF L+D        D + GST+
Sbjct: 1081 VIFYDSDWNPQLDAQAQDRSHRIGQTRDVHIYRLISEYTVESNMLRRANQKRMLDKIVIQGGEFTTEWFRKADVLDLFDLDDESLKKVKADSDSGSTK 1178          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_SCLS1 (Putative DNA helicase INO80 OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=INO80 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 30/51 (58.82%), Postives = 39/51 (76.47%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYK 170
            VI +D DWNP+ D QA +RA R+GQ + VTVYR+ITRGTIEE++  R + K
Sbjct: 1512 VIFYDSDWNPTIDSQAMDRAHRLGQTRQVTVYRMITRGTIEERIRKRALQK 1562          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: INO80_ARATH (DNA helicase INO80 complex homolog 1 OS=Arabidopsis thaliana GN=INO80 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.531e-11
Identity = 29/59 (49.15%), Postives = 43/59 (72.88%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKIL 194
            VI ++ DWNP+ D+QA +RA R+GQ +DVTVYRLI + T+EEK+ HR   K+ +   ++
Sbjct: 1296 VIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEKILHRASQKNTVQQLVM 1354          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: SNF21_SCHPO (Chromatin structure-remodeling complex subunit snf21 OS=Schizosaccharomyces pombe GN=snf21 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILK--------NPQQRRFF 221
            VIIFD DWNP  D+QA++RA RIGQ ++V +YRLIT  ++EE +  R  YK  +  K+++         P++R  F
Sbjct:  827 VIIFDSDWNPHQDLQAQDRAHRIGQTKEVRIYRLITEKSVEENILARAQYKLDIDGKVIQAGKFDNKSTPEEREAF 902          
BLAST of CX295574 vs. ExPASy Swiss-Prot
Match: MOT1_YEAST (TATA-binding protein-associated factor MOT1 OS=Saccharomyces cerevisiae GN=MOT1 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.836e-11
Identity = 37/115 (32.17%), Postives = 61/115 (53.04%), Query Frame = 3
Query:   18 VIIFDPDWNPSTDVQARERAWRIGQKQDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQRRFFKARNMKDLFTL----------NDDGNGGSTETSNIFSQLSEDVNVVG 332
            VI  + DWNP  D+QA +RA RIGQK+ V VYR+IT+GT+EEK+   Q +K  + + ++   QQ     + +   L  L          N++ N G ++ +     ++ +  + G
Sbjct: 1723 VIFVEHDWNPMNDLQAMDRAHRIGQKKVVNVYRIITKGTLEEKIMGLQKFKMNIASTVVN--QQNSGLASMDTHQLLDLFDPDNVTSQDNEEKNNGDSQAAKGMEDIANETGLTG 1835          
The following BLAST results are available for this feature:
BLAST of CX295574 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CHD1_HUMAN5.767e-1148.33Chromodomain-helicase-DNA-binding protein 1 OS=Hom... [more]
CHD1_CHICK5.767e-1148.33Chromodomain-helicase-DNA-binding protein 1 OS=Gal... [more]
SWR1_SCHPO7.531e-1136.73Helicase swr1 OS=Schizosaccharomyces pombe GN=swr1... [more]
INO80_SCLS17.531e-1158.82Putative DNA helicase INO80 OS=Sclerotinia sclerot... [more]
INO80_ARATH7.531e-1149.15DNA helicase INO80 complex homolog 1 OS=Arabidopsi... [more]
SNF21_SCHPO9.836e-1143.42Chromatin structure-remodeling complex subunit snf... [more]
MOT1_YEAST9.836e-1132.17TATA-binding protein-associated factor MOT1 OS=Sac... [more]

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Properties
Property NameValue
Genbank descriptionC05073F07SK DroRLeaf1 Citrus clementina cDNA clone C05073F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295574 ID=CX295574; Name=CX295574; organism=Citrus clementina; type=EST; length=662bp
CTGACTGGTGCAACAGGGTGATCATTTTTGACCCTGATTGGAACCCATCA
ACTGACGTGCAGGCTAGGGAGCGTGCTTGGCGTATCGGTCAAAAACAGGA
TGTAACTGTATATAGATTGATTACACGCGGAACTATTGAGGAGAAAGTGT
ACCACCGACAGATATACAAGCATTTTCTCACAAATAAGATATTGAAGAAC
CCACAGCAGAGAAGGTTTTTTAAAGCTCGTAATATGAAAGATCTTTTCAC
TCTCAATGATGATGGGAATGGTGGGTCTACTGAAACTTCTAATATTTTTA
GTCAGTTGTCTGAAGATGTGAATGTTGTTGGGGATCAGAAAGATAAGGAG
GACAAGCAGAAACATAAGAAAGCTGCTTCAGCAAACGCTGATGATGCTGT
AGGTGACAAAGAAAACAACTTAGAGATTGGGTCCTCCAGGAGAAAAGGGA
AAGAAAAAGTTGATAATATTGGTGACGAAGTAGATGAAGAAACAAATATT
TTAAAGAGCCTCTTTGACGCCAATGGAATACATGTAAGTTTTCCTCTGTT
TGCTTACATGATTGCCTTTGGTTGCGTAGGCTGTACACTCTTTTTCTGTG
GAGGAGTTAATCTTCTTGCCTCTAACTCATTGATCAAAAGACTTACCCTG
CTACTACTATAA
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