CX295588

Overview
NameCX295588
Unique NameCX295588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length738
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_MAGGR (ATP-dependent RNA helicase DHH1 OS=Magnaporthe grisea GN=DHH1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.175e-28
Identity = 75/184 (40.76%), Postives = 108/184 (58.70%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F +F LK +LL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA FV+  L+   P   ++  L+L  TRELA Q     +    +L  I V V  GG  ++   D+L+ + P  IVVGTPGRIL LA      L     FI+DE DK+L S++    ++++ +  P D+Q M+FSA
Sbjct:   38 FENFGLKRDLLMGIFEAGFEKPSPIQEESIPVALTGRDILARAKNGTGKTAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQVCKTLGKHL-GINVMVTTGGTTLR--DDILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDEADKLL-SIEFTPVIEQLLQFHPKDRQVMLFSA 217          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: IF4A_NEOFI (ATP-dependent RNA helicase eIF4A OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=tif1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 77/186 (41.40%), Postives = 105/186 (56.45%), Query Frame = 2
Query:  131 SSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            +  F    LKPELLR I   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN     AL+L  TRELA QI         ++ +I+     GG N++     L+ E PQ+VVGTPGR+  + + + L   N++ FILDE D+ML S      + +IF++ P   Q ++ SA
Sbjct:   24 TDSFDSMELKPELLRGIYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFM-NIECHACIGGTNVREDMKALQ-EGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSA 206          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_CANAL (ATP-dependent RNA helicase DHH1 OS=Candida albicans GN=DHH1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 73/184 (39.67%), Postives = 111/184 (60.33%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F DF LK ELL  I ++GFE PS +Q E IP A+ G D++ +AK+G GKTA F++  LQ  +P   +V AL+L  TRELA Q          ++   +  V  GG +++   D+++   P  I+VGTPGR+L LA  K + L     F++DE DKML S + +  +++I +  P ++Q+++FSA
Sbjct:   32 FEDFNLKRELLMGIFEAGFEKPSPIQEESIPMALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGKHV-GTQCMVTTGGTSLR--DDIVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDEADKML-SREFKGIIEQILEFFPPNRQALLFSA 211          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DHH1_BOTFB (ATP-dependent RNA helicase dhh1 OS=Botryotinia fuckeliana (strain B05.10) GN=dhh1 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.841e-28
Identity = 74/184 (40.22%), Postives = 107/184 (58.15%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECP-QIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F DF +K ELL  I + G+E PS +Q E IP A+ G D++ +AK+G GKTA FV+  L++  P   +V  L+L  TRELA Q     +    +L  I V V  GG  ++   D+L+ + P  I+VGTPGRIL LA      L     F++DE DK+L S +    ++++ +  P D+Q M+FSA
Sbjct:   49 FEDFSIKRELLMGIFEMGYEKPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALERINPKNTKVQCLILVPTRELALQTSQVCKTLGQHL-GINVMVTTGGTTLR--DDILRLQEPVHIIVGTPGRILDLAGKNVADLSECNMFVMDEADKLL-SPEFTIVIEQLLQFHPKDRQIMLFSA 228          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: IF4A_ASPFU (ATP-dependent RNA helicase eIF4A OS=Aspergillus fumigatus GN=tif1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 75/178 (42.13%), Postives = 103/178 (57.87%), Query Frame = 2
Query:  155 LKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            LKPELLR +   GFE PS +Q   I   I G DVI QA+SG GKTA F +S LQ+ +PN     AL+L  TRELA QI         ++ +I+     GG N++     L+ E PQ+VVGTPGR+  + + + L   N++ FILDE D+ML S      + +IF++ P   Q ++ SA
Sbjct:   32 LKPELLRGVYAYGFERPSAIQQRAILPIIKGNDVIAQAQSGTGKTATFSISALQKLDPNVKGCQALILAPTRELAQQIQKVVVAIGDFM-NIECHACIGGTNVREDMKALQ-EGPQVVVGTPGRVQDMIQRRVLRTDNLKMFILDEADEML-SRGFTEQIYDIFQLLPQSTQVVLLSA 206          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DEAD_SHIFL (Cold-shock DEAD box protein A OS=Shigella flexneri GN=deaD PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 73/183 (39.89%), Postives = 98/183 (53.55%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  LQ  +P       LVL  TRELA Q+      FS ++  + V   YGG    +    L+ + PQIVVGTPGR+L   +   L L  +   +LDE D+ML  +    DV+ I    P   Q+ +FSA
Sbjct:    8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTALFSA 188          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DEAD_HAEIN (Cold-shock DEAD box protein A homolog OS=Haemophilus influenzae GN=deaD PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 73/183 (39.89%), Postives = 99/183 (54.10%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F D  L   +L+A+ D GFE PS +Q  CIP  + G DV+  A++G GKTA F L  L Q +P+      LV+  TRELA Q+    E F  Y    ++   YGG    I    LK +  Q+VVGTPGRIL   R   L+L  +R  +LDE D+ML  +    DV+ +    P + Q+ +FSA
Sbjct:    7 FNDLGLPEFILKAVSDLGFETPSPIQQSCIPHLLNGNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQGTRIVTLYGGQRYDIQLRALK-QGAQVVVGTPGRILDHIRRGTLNLSELRFIVLDEADEMLR-MGFIDDVETVMAELPENHQTALFSA 187          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DEAD_ECOLI (Cold-shock DEAD box protein A OS=Escherichia coli (strain K12) GN=deaD PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 73/183 (39.89%), Postives = 98/183 (53.55%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  LQ  +P       LVL  TRELA Q+      FS ++  + V   YGG    +    L+ + PQIVVGTPGR+L   +   L L  +   +LDE D+ML  +    DV+ I    P   Q+ +FSA
Sbjct:    8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTALFSA 188          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DEAD_ECOL6 (Cold-shock DEAD box protein A OS=Escherichia coli O6 GN=deaD PE=3 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 73/183 (39.89%), Postives = 98/183 (53.55%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  LQ  +P       LVL  TRELA Q+      FS ++  + V   YGG    +    L+ + PQIVVGTPGR+L   +   L L  +   +LDE D+ML  +    DV+ I    P   Q+ +FSA
Sbjct:    8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTALFSA 188          
BLAST of CX295588 vs. ExPASy Swiss-Prot
Match: DEAD_ECO57 (Cold-shock DEAD box protein A OS=Escherichia coli O157:H7 GN=deaD PE=3 SV=3)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 73/183 (39.89%), Postives = 98/183 (53.55%), Query Frame = 2
Query:  140 FRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQTEPNPGQVTALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPQIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQSMMFSA 688
            F D  LK  +L A+ D G+E PS +Q ECIP  + G DV+  A++G GKTA F L  LQ  +P       LVL  TRELA Q+      FS ++  + V   YGG    +    L+ + PQIVVGTPGR+L   +   L L  +   +LDE D+ML  +    DV+ I    P   Q+ +FSA
Sbjct:    8 FADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLR-MGFIEDVETIMAQIPEGHQTALFSA 188          
The following BLAST results are available for this feature:
BLAST of CX295588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DHH1_MAGGR2.175e-2840.76ATP-dependent RNA helicase DHH1 OS=Magnaporthe gri... [more]
IF4A_NEOFI2.841e-2841.40ATP-dependent RNA helicase eIF4A OS=Neosartorya fi... [more]
DHH1_CANAL2.841e-2839.67ATP-dependent RNA helicase DHH1 OS=Candida albican... [more]
DHH1_BOTFB2.841e-2840.22ATP-dependent RNA helicase dhh1 OS=Botryotinia fuc... [more]
IF4A_ASPFU6.329e-2842.13ATP-dependent RNA helicase eIF4A OS=Aspergillus fu... [more]
DEAD_SHIFL6.329e-2839.89Cold-shock DEAD box protein A OS=Shigella flexneri... [more]
DEAD_HAEIN6.329e-2839.89Cold-shock DEAD box protein A homolog OS=Haemophil... [more]
DEAD_ECOLI6.329e-2839.89Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECOL66.329e-2839.89Cold-shock DEAD box protein A OS=Escherichia coli ... [more]
DEAD_ECO576.329e-2839.89Cold-shock DEAD box protein A OS=Escherichia coli ... [more]

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Properties
Property NameValue
Genbank descriptionC05073G09SK DroRLeaf1 Citrus clementina cDNA clone C05073G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295588 ID=CX295588; Name=CX295588; organism=Citrus clementina; type=EST; length=738bp
TGGGAGAGAAAGAGACAACGAGTACGAGGATGAGCTTCTCGACTACGAGG
AAGAAGATGCTCAAGCTCCCGATTCCGTCGCTACCAAAGCAAACGGCGAA
GCCGCCAAGAAGGGCTATGTTGGTATACACAGTTCAGGATTCAGAGACTT
TCTTTTGAAGCCGGAACTTCTTCGTGCAATTGTGGACTCAGGATTTGAGC
ATCCTTCAGAAGTGCAACATGAATGCATACCTCAAGCGATTCTGGGCATG
GATGTTATTTGCCAAGCTAAATCAGGGATGGGGAAGACTGCTGTGTTTGT
TCTGTCAACTCTTCAGCAAACAGAGCCAAATCCAGGCCAAGTTACTGCAC
TTGTTTTATGTCACACTAGAGAGTTAGCTTATCAGATCTGCCATGAGTTT
GAGAGGTTCAGTACTTACCTGCCTGATATCAAGGTTGCTGTCTTTTATGG
TGGAGTTAATATAAAAATTCACAAAGATTTGCTGAAAAACGAATGTCCCC
AAATTGTTGTTGGGACTCCTGGAAGGATACTAGCTCTTGCTAGAGATAAA
GACCTCTCTTTGAAGAATGTGAGGCATTTTATCCTTGATGAATGCGATAA
GATGCTGGAATCTCTTGACATGAGAAGAGATGTGCAAGAGATTTTCAAGA
TGACTCCTCATGACAAGCAAAGTATGATGTTTTCAGCACACTCAGCAAGG
AATCGCCCAGTCTGCAGAAATTATGCAGATCCATGGAA
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