CX295606

Overview
NameCX295606
Unique NameCX295606
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length726
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295606 vs. ExPASy Swiss-Prot
Match: MPAC1_CARBE (Major pollen allergen Car b 1 isoforms 1A and 1B OS=Carpinus betulus PE=1 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 2.413e-24
Identity = 61/159 (38.36%), Postives = 92/159 (57.86%), Query Frame = 3
Query:   48 MGVIRVEKEVPSAVAPSRLFKA-LNDTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGNPNLY 521
            MGV   E E PS +  +RLFK+ + D    +PK+APQ I S++ + G+GG GTIK + FA+G  +K  K+R+D +D  N    YT  EGD +    +K  +++KI+ +  GGSI K  ++ HA     VN    K ++E   +L + VE+YLL +   Y
Sbjct:    1 MGVFNYEAETPSVIPAARLFKSYVLDGDKLIPKVAPQVISSVENVGGNGGPGTIKNITFAEGIPFKFVKERVDEVDNANFKYNYTVIEGDVLGDKLEKVSHELKIVAAPGGGSIVKISSKFHAKGYHEVNAEKMKGAKEMAEKLLRAVESYLLAHTAEY 159          
BLAST of CX295606 vs. ExPASy Swiss-Prot
Match: L18B_LUPLU (Protein LlR18B OS=Lupinus luteus GN=LLR18B PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24
Identity = 59/157 (37.58%), Postives = 98/157 (62.42%), Query Frame = 3
Query:   48 MGVIRVEKEVPSAVAPSRLFKAL-NDTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGNPN 515
            MGV   E E PSAVA ++LFKAL  D+ + +PK+  Q I+S++I++G+GG GT+K +  + GG+      +IDA+DE +    Y+   G G+ +  +K  ++ K++   +GGSI K   + H   D ++++   +E++ +G+ LFK VE Y+L NPN
Sbjct:    1 MGVFAFEDEHPSAVAQAKLFKALTKDSDDIIPKVIEQ-IQSVEIVEGNGGPGTVKKITASHGGHTSYVLHKIDAIDEASFEYNYSIVGGTGLDESLEKITFESKLLSGPDGGSIGKIKVKFHTKGD-VLSDAVREEAKARGTGLFKAVEGYVLANPN 155          
BLAST of CX295606 vs. ExPASy Swiss-Prot
Match: BEV1G_BETVE (Major pollen allergen Bet v 1-G OS=Betula verrucosa GN=BETV1G PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24
Identity = 57/159 (35.85%), Postives = 89/159 (55.97%), Query Frame = 3
Query:   48 MGVIRVEKEVPSAVAPSRLFKA-LNDTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGNPNLY 521
            MGV   E E  S +  +RLFKA + +  N +PK+APQ I S++ ++G+GG GTIK +NF +G  +K  K R+D +D  N    Y+  EG  +    +K   ++KI+ + +GG + K   + H   +  V     K S+E G  L + VE+YLL + + Y
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILEGDNLIPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 159          
BLAST of CX295606 vs. ExPASy Swiss-Prot
Match: BEV1D_BETVE (Major pollen allergen Bet v 1-D/H OS=Betula verrucosa GN=BETV1D PE=1 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 4.116e-24
Identity = 58/159 (36.48%), Postives = 89/159 (55.97%), Query Frame = 3
Query:   48 MGVIRVEKEVPSAVAPSRLFKA-LNDTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGNPNLY 521
            MGV   E E  S +  +RLFKA + D  N +PK+APQ I S++ ++G+GG GTIK +NF +G  +K  K R+D +D  N    Y+  EG  +    +K   ++KI+ + +GG + K   + H   +  V     K S+E G  L + VE+YLL + + Y
Sbjct:    1 MGVFNYEIETTSVIPAARLFKAFILDGDNLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 159          
BLAST of CX295606 vs. ExPASy Swiss-Prot
Match: MPAC2_CARBE (Major pollen allergen Car b 1 isoform 2 OS=Carpinus betulus PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.375e-24
Identity = 57/159 (35.85%), Postives = 92/159 (57.86%), Query Frame = 3
Query:   48 MGVIRVEKEVPSAVAPSRLFKA-LNDTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGNPNLY 521
            MGV   E E  S +  +RLFKA + D +  +PK++PQ + S++ ++G+GG GTIK + F++G   K  K+R++ +D  N    YT  EGD +    +K  +++KI+ +  GGSI K  ++ HA     VN    K ++E   +L + VE+YLL +   Y
Sbjct:    1 MGVFNYEAETTSVIPAARLFKAFILDGNKLIPKVSPQAVSSVENVEGNGGPGTIKKITFSEGSPVKYVKERVEEIDHTNFKYNYTVIEGDVLGDKLEKVSHELKIVAAPGGGSIVKISSKFHAKGYHEVNAEEMKGAKEMAEKLLRAVESYLLAHTAEY 159          
BLAST of CX295606 vs. ExPASy Swiss-Prot
Match: PR1_MEDSA (Class-10 pathogenesis-related protein 1 OS=Medicago sativa GN=MSPR10-1 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 7.021e-24
Identity = 59/157 (37.58%), Postives = 88/157 (56.05%), Query Frame = 3
Query:   48 MGVIRVEKEVPSAVAPSRLFKAL-NDTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGNPN 515
            MGV   E E  S VAP+RL+KAL  D+ N +PK+    I+SI+I++G+GGAGTIK L F +GG  K    ++D +D+ N    Y+   G G+    +K  ++ K+    +GGS  K   +     D   +E   K  + +G  LFK +E Y+L NP+
Sbjct:    1 MGVFNFEDETTSIVAPARLYKALVTDSDNLIPKVI-DAIQSIEIVEGNGGAGTIKKLTFVEGGETKYDLHKVDLVDDVNFAYNYSIVGGGGLPDTVEKISFESKLSAGPDGGSTAKLTVKYFTKGDAAPSEEEIKGGKARGDGLFKALEGYVLANPD 156          
BLAST of CX295606 vs. ExPASy Swiss-Prot
Match: RNS1_PANGI (Ribonuclease 1 OS=Panax ginseng PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.198e-23
Identity = 61/154 (39.61%), Postives = 88/154 (57.14%), Query Frame = 3
Query:   51 GVIRVEKEVPSAVAPSRLFKALN-DTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGN 509
            GV + E E  S V   +L+  L  D  + LPK  PQ IKS +I++GDGG GT+KL+   +   +   KQRIDA+D+D LT  Y+   GD +L + +  V    I+ + +GGSI K     +   D ++ E + K++ EK   +FK VEAYLL N
Sbjct:    1 GVQKTEVEATSTVPAQKLYAGLLLDIDDILPKAFPQAIKSSEIIEGDGGVGTVKLVTLGEASQFNTMKQRIDAIDKDALTYTYSIIGGDILLDIIESIVNHFTIVPTPDGGSIVKNTTIYNTIGDAVIPEENIKDATEKAGLIFKAVEAYLLAN 154          
BLAST of CX295606 vs. ExPASy Swiss-Prot
Match: DRR3_PEA (Disease resistance response protein Pi49 OS=Pisum sativum GN=DRR49A PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23
Identity = 61/157 (38.85%), Postives = 85/157 (54.14%), Query Frame = 3
Query:   48 MGVIRVEKEVPSAVAPSRLFKAL-NDTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGNPN 515
            MGV  VE E+ S VAP+ L+KAL  D  N  PK+    IKSI+I++G+GGAGTIK L F + G  K    +++ +D  NL   Y+   G G     +K  ++ K+    NGGSI K   +     D   +E   K  + KG  LFK +E Y L +P+
Sbjct:    1 MGVFNVEDEITSVVAPAILYKALVTDADNLTPKVI-DAIKSIEIVEGNGGAGTIKKLTFVEDGETKHVLHKVELVDVANLAYNYSIVGGVGFPDTVEKISFEAKLSAGPNGGSIAKLSVKYFTKGDAAPSEEQLKTDKAKGDGLFKALEGYCLAHPD 156          
BLAST of CX295606 vs. ExPASy Swiss-Prot
Match: BEV1L_BETVE (Major pollen allergen Bet v 1-L OS=Betula verrucosa GN=BETV1L PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.043e-23
Identity = 56/159 (35.22%), Postives = 88/159 (55.35%), Query Frame = 3
Query:   48 MGVIRVEKEVPSAVAPSRLFKA-LNDTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGNPNLY 521
            MGV   E E  S +  +R+FKA + D    +PK+APQ I S++ ++G+GG GTIK +NF +G  +K  K R+D +D  N    Y+  EG  +    +K   ++KI+ + +GG + K   + H   +  V     K S+E G  L + VE+YLL + + Y
Sbjct:    1 MGVFNYETEATSVIPAARMFKAFILDGDKLVPKVAPQAISSVENIEGNGGPGTIKKINFPEGFPFKYVKDRVDEVDHTNFKYNYSVIEGGPVGDTLEKISNEIKIVATPDGGCVLKISNKYHTKGNHEVKAEQVKASKEMGETLLRAVESYLLAHSDAY 159          
BLAST of CX295606 vs. ExPASy Swiss-Prot
Match: PR2_PHAVU (Pathogenesis-related protein 2 OS=Phaseolus vulgaris PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.668e-23
Identity = 60/156 (38.46%), Postives = 86/156 (55.13%), Query Frame = 3
Query:   48 MGVIRVEKEVPSAVAPSRLFKAL-NDTHNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKQTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFKLVEAYLLGNP 512
            M V   E +  S VAP+ L+KAL  D    +PK A  + KS++I++G+GG GTIK ++F + G  K    +I+ +DE NL   Y+   G  +    +K   D K+ D  NGGS+ K   + H+  D   NE   K  + K   LFK++EAYLL NP
Sbjct:    1 MAVFTFEDQTTSPVAPATLYKALVKDADTIVPK-AVDSFKSVEIVEGNGGPGTIKKISFVEDGETKFVLHKIEEIDEANLGYSYSIVGGAALPDTAEKISIDSKLSDGPNGGSVVKLSIKYHSKGDAPPNEDELKAGKAKSDALFKVIEAYLLANP 155          
The following BLAST results are available for this feature:
BLAST of CX295606 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
MPAC1_CARBE2.413e-2438.36Major pollen allergen Car b 1 isoforms 1A and 1B O... [more]
L18B_LUPLU4.116e-2437.58Protein LlR18B OS=Lupinus luteus GN=LLR18B PE=1 SV... [more]
BEV1G_BETVE4.116e-2435.85Major pollen allergen Bet v 1-G OS=Betula verrucos... [more]
BEV1D_BETVE4.116e-2436.48Major pollen allergen Bet v 1-D/H OS=Betula verruc... [more]
MPAC2_CARBE5.375e-2435.85Major pollen allergen Car b 1 isoform 2 OS=Carpinu... [more]
PR1_MEDSA7.021e-2437.58Class-10 pathogenesis-related protein 1 OS=Medicag... [more]
RNS1_PANGI1.198e-2339.61Ribonuclease 1 OS=Panax ginseng PE=1 SV=1[more]
DRR3_PEA2.043e-2338.85Disease resistance response protein Pi49 OS=Pisum ... [more]
BEV1L_BETVE2.043e-2335.22Major pollen allergen Bet v 1-L OS=Betula verrucos... [more]
PR2_PHAVU2.668e-2338.46Pathogenesis-related protein 2 OS=Phaseolus vulgar... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05074A03SK DroRLeaf1 Citrus clementina cDNA clone C05074A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295606 ID=CX295606; Name=CX295606; organism=Citrus clementina; type=EST; length=726bp
GAGGATTGACATCTCTCTTTTCTCTAATTAAGCAATAGATATTTAACATG
GGTGTCATTCGCGTTGAGAAAGAGGTGCCATCGGCTGTTGCACCATCAAG
ATTGTTCAAGGCTTTAAATGACACTCACAATTTTTTGCCAAAGATCGCGC
CTCAAACAATTAAGAGCATCGATATTCTTCAAGGAGATGGAGGTGCTGGC
ACTATCAAGCTGTTGAACTTTGCTGATGGTGGTAATTACAAGCAGACGAA
GCAAAGAATTGATGCACTTGACGAGGACAATTTGACAATGAAGTACACTA
CGTATGAAGGAGATGGGATTTTGAAAATGACGGACAAAAGCGTGTACGAT
GTTAAGATCATGGATTCTGGCAATGGAGGAAGCATCTGCAAGTTTGTTGC
GGAGGTCCATGCAAATGACGATAAACTGGTCAACGAAGGGCACGCAAAGG
AATCCGAAGAAAAAGGATCGGAATTGTTCAAGCTCGTGGAAGCCTATCTC
TTGGGTAATCCTAATCTCTATGCTTAAATCAATCATCCATATGCATTGGC
TTTGCCAATTGCGAAATTTCCAGCTAGCTAACTAAATAAGGCTGGTGCCA
TTGTACGTAATTAAGCTTTTGAAGCTGAATGTAAATACACGCGTATGTAC
TTAGTGTGTTCGTTAAATAAATGTCCAATCTGCTGGACATATGTGAGATA
ATATAGATCATGTGTGGTCAGTATGC
back to top