CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_GLUOX (1-deoxy-D-xylulose-5-phosphate synthase OS=Gluconobacter oxydans GN=dxs PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.657e-17
Identity = 42/66 (63.64%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P LD + +P  M+NLS + L+QLA ELR++ V++VS TGGHL A+LGVVELT+ALH VFNTPDD+I
Sbjct:   15 PELDRVRFPADMRNLSVDQLKQLADELRSETVDAVSTTGGHLGASLGVVELTVALHAVFNTPDDRI 80          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS2_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.657e-17
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  282 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +P TPLLDTI  P   + LS   LEQLA E+RA+++++VS TGGHL + LGVVELT+ALH VF+TPDD+I
Sbjct:    4 RPITPLLDTIRGPSDTRGLSVAQLEQLAREVRAEMIDAVSVTGGHLGSGLGVVELTVALHHVFDTPDDRI 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS1_RHORT (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.657e-17
Identity = 43/70 (61.43%), Postives = 55/70 (78.57%), Query Frame = 3
Query:  282 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +P TPLLDTI  P   + LS   LEQLA E+RA+++++VS TGGHL + LGVVELT+ALH VF+TPDD+I
Sbjct:    4 RPITPLLDTIRGPSDTRGLSVAQLEQLAREVRAEMIDAVSVTGGHLGSGLGVVELTVALHHVFDTPDDRI 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_RHIL3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.164e-17
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  285 PPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P TPLLD + YP  ++ L   DL QLA E+R +++++VS+TGGHL A LGVVELT+A+H VF+TPDD++
Sbjct:    5 PKTPLLDQVIYPADLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHSVFDTPDDRL 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_RHIE6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CIAT 652) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.164e-17
Identity = 39/69 (56.52%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  285 PPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P TPLLD + YP  ++ L   DL QLA E+R +++++VS+TGGHL A LGVVELT+A+H VF+TPDD++
Sbjct:    5 PKTPLLDQVIYPADLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHSVFDTPDDRL 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MESSB (1-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhizobium sp. (strain BNC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.164e-17
Identity = 39/69 (56.52%), Postives = 56/69 (81.16%), Query Frame = 3
Query:  285 PPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P TPLL+ + +P  +K + +EDL QLA ELRA+++++VS+TGGHL A LGVVELT+ALH +F+TP D++
Sbjct:   18 PETPLLNRVRFPSDLKQIPEEDLPQLAEELRAEMIDAVSQTGGHLGAGLGVVELTVALHYIFDTPHDRL 86          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_AGRRK (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.826e-17
Identity = 38/69 (55.07%), Postives = 55/69 (79.71%), Query Frame = 3
Query:  285 PPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P TPLLD ++YP  ++ L   DL QLA E+R +++++VS+TGGHL A LGVVELT+A+H VF+TP+D++
Sbjct:    5 PETPLLDQVHYPSDLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHNVFDTPNDRL 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_RHIEC (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.691e-17
Identity = 38/69 (55.07%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  285 PPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P TPLLD + YP  ++ L   DL QLA E+R +++++VS+TGGHL A LGVVELT+A+H VF+TP+D++
Sbjct:    5 PKTPLLDQVTYPADLRKLEDRDLPQLAREVRDEMIDAVSRTGGHLGAGLGVVELTIAIHSVFDTPNDRL 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_AGRVS (1-deoxy-D-xylulose-5-phosphate synthase OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=dxs PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.691e-17
Identity = 38/70 (54.29%), Postives = 56/70 (80.00%), Query Frame = 3
Query:  282 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            KP TPLLD + +P  ++ +  +D+ Q+A ELR +++++VS TGGHL A LGVVELTLA+H+VFNTP+D++
Sbjct:    4 KPNTPLLDQVVFPSDLRKIEDKDMPQVARELRDEMIDAVSVTGGHLGAGLGVVELTLAIHKVFNTPEDRL 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS2_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.820e-17
Identity = 44/71 (61.97%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  279 EKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            + P TPLLD ++ P  MK LS   L QLA ELR++ V++VS TGGHL A LGVVELT+ALH VF+TP DKI
Sbjct:    3 DMPKTPLLDLVHRPADMKGLSDRQLVQLADELRSETVSAVSVTGGHLGAGLGVVELTVALHAVFDTPRDKI 73          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_GLUOX1.657e-1763.641-deoxy-D-xylulose-5-phosphate synthase OS=Glucono... [more]
DXS2_RHORT1.657e-1761.431-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS1_RHORT1.657e-1761.431-deoxy-D-xylulose-5-phosphate synthase 1 OS=Rhodo... [more]
DXS_RHIL32.164e-1756.521-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_RHIE62.164e-1756.521-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_MESSB2.164e-1756.521-deoxy-D-xylulose-5-phosphate synthase OS=Mesorhi... [more]
DXS_AGRRK2.826e-1755.071-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS_RHIEC3.691e-1755.071-deoxy-D-xylulose-5-phosphate synthase OS=Rhizobi... [more]
DXS_AGRVS3.691e-1754.291-deoxy-D-xylulose-5-phosphate synthase OS=Agrobac... [more]
DXS2_ROSDO4.820e-1761.971-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseo... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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