CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS1_JANSC (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Jannaschia sp. (strain CCS1) GN=dxs1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.820e-17
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 3
Query:  279 EKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            ++P TPLLD +  P  +K LS  DL++LA ELRA+++ +VSKTGGH  A LGVVELT+ALH VF+TP DK+
Sbjct:    3 DRPSTPLLDNVQSPNDLKGLSDFDLKRLADELRAEMIWTVSKTGGHFGAGLGVVELTVALHSVFDTPRDKL 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_SPHAL (1-deoxy-D-xylulose-5-phosphate synthase OS=Sphingopyxis alaskensis GN=dxs PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.295e-17
Identity = 39/71 (54.93%), Postives = 54/71 (76.06%), Query Frame = 3
Query:  279 EKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            ++P TPLLDT++ P  ++ L  EDL Q A ELRA+++++V  TGGHL + LGVVELT A+H VF+TP DK+
Sbjct:    3 DRPHTPLLDTVDVPADLRKLKPEDLRQFADELRAEMISAVGTTGGHLGSGLGVVELTTAIHYVFDTPRDKL 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_POLSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.295e-17
Identity = 41/66 (62.12%), Postives = 54/66 (81.82%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL+TIN P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D++
Sbjct:    3 PLLETINSPADLRRLPRAQLKALADELRAFVLDSVSKTGGHLSSNLGTVELTVALHYVFNTPEDRL 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_METPP (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylibium petroleiphilum (strain PM1) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.295e-17
Identity = 40/66 (60.61%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL TI+ P  ++ LS+ +L+QLA ELR  ++ SVS+TGGHLS+NLG VELT+ALH VFNTP D++
Sbjct:    5 PLLSTIDQPADLRGLSRAELKQLAQELRDHVLTSVSQTGGHLSSNLGTVELTIALHHVFNTPQDRL 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_AZOSE (1-deoxy-D-xylulose-5-phosphate synthase OS=Azoarcus sp. (strain EbN1) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.295e-17
Identity = 40/69 (57.97%), Postives = 54/69 (78.26%), Query Frame = 3
Query:  285 PPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PP PLL  I+ P  ++ L + +L  LAAELRA ++ SVSKTGGHLS+NLG VEL++ALH +F+TP+D+I
Sbjct:    2 PPYPLLHRIDSPFDLRKLDRRELPALAAELRAFLIESVSKTGGHLSSNLGTVELSIALHYIFDTPEDRI 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_ACIAC (1-deoxy-D-xylulose-5-phosphate synthase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.295e-17
Identity = 40/66 (60.61%), Postives = 55/66 (83.33%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL T+N P  ++ +S+  L++LAAELRA +++SVSKTGGHLS+NLG VELT+ALH VF+TP D++
Sbjct:    7 PLLQTVNDPADLRRMSRAQLKELAAELRAFVLDSVSKTGGHLSSNLGTVELTVALHTVFDTPRDRL 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_SILST (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter sp. (strain TM1040) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.222e-17
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  279 EKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            ++P TPLLD I  P  +K LS   LEQ+A ELR + +++VS TGGHL A LGVVELT+ALH VF+TP DK+
Sbjct:    3 DRPQTPLLDQIASPADLKRLSDAQLEQVAHELRQETISAVSVTGGHLGAGLGVVELTVALHSVFDTPKDKV 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_SILPO (1-deoxy-D-xylulose-5-phosphate synthase OS=Silicibacter pomeroyi GN=dxs PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.222e-17
Identity = 42/71 (59.15%), Postives = 52/71 (73.24%), Query Frame = 3
Query:  279 EKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            ++P TPLLD +  P  +K  S   L QLA ELRA+ V++VS TGGHL A LGVVELT+ALH VF+TP DK+
Sbjct:    3 DRPHTPLLDQVTRPADLKRFSDAQLTQLAGELRAETVSAVSVTGGHLGAGLGVVELTVALHAVFDTPRDKV 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BRUO2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.222e-17
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 3
Query:  282 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +P TPLLD +  P  ++ L + DL QLA ELR +++++VS TGGHL A LGVVELT+ALH VFNTP D+I
Sbjct:    3 RPSTPLLDKVPTPDRLRALPERDLPQLAEELRTELIDAVSTTGGHLGAGLGVVELTVALHHVFNTPYDRI 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BARBK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=dxs PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 8.222e-17
Identity = 41/70 (58.57%), Postives = 54/70 (77.14%), Query Frame = 3
Query:  282 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +P TPLLD +  P+ ++ L   DL +LA ELRA++++ VS TGGHL A LGVVELT+ALH +FNTPDD+I
Sbjct:    3 RPLTPLLDCVLSPLDLRALPASDLARLADELRAEMIDVVSVTGGHLGAGLGVVELTIALHYIFNTPDDRI 72          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS1_JANSC4.820e-1759.151-deoxy-D-xylulose-5-phosphate synthase 1 OS=Janna... [more]
DXS_SPHAL6.295e-1754.931-deoxy-D-xylulose-5-phosphate synthase OS=Sphingo... [more]
DXS_POLSJ6.295e-1762.121-deoxy-D-xylulose-5-phosphate synthase OS=Polarom... [more]
DXS_METPP6.295e-1760.611-deoxy-D-xylulose-5-phosphate synthase OS=Methyli... [more]
DXS_AZOSE6.295e-1757.971-deoxy-D-xylulose-5-phosphate synthase OS=Azoarcu... [more]
DXS_ACIAC6.295e-1760.611-deoxy-D-xylulose-5-phosphate synthase OS=Acidovo... [more]
DXS_SILST8.222e-1759.151-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_SILPO8.222e-1759.151-deoxy-D-xylulose-5-phosphate synthase OS=Silicib... [more]
DXS_BRUO28.222e-1758.571-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BARBK8.222e-1758.571-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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