CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BACSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus clausii (strain KSM-K16) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.407e-13
Identity = 33/64 (51.56%), Postives = 48/64 (75.00%), Query Frame = 3
Query:  300 LDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            L+ I  P  +KN S + LE+LAA++R  ++  +S TGGH+  NLGVVELTLALH++F++P DK+
Sbjct:    3 LEEIQDPSFLKNYSNKQLEELAADIRRFLIEKLSATGGHIGPNLGVVELTLALHQLFDSPKDKL 66          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_ALKOO (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkaliphilus oremlandii (strain OhILAs) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.407e-13
Identity = 35/61 (57.38%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  309 INYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            IN     K L+  +++ LA E+R  ++ SVSKTGGHL++NLGVVELTLALH+ FN+P+DKI
Sbjct:    8 INSIEDFKKLNSNEIKVLAEEIRHFLIESVSKTGGHLASNLGVVELTLALHQAFNSPEDKI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_LISIN (1-deoxy-D-xylulose-5-phosphate synthase OS=Listeria innocua GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 34/60 (56.67%), Postives = 45/60 (75.00%), Query Frame = 3
Query:  309 INYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            I  P  MK L  ++LE LAA++RA ++ S SK+GGH+  NLGVVELT+ALH  FN+P+DK
Sbjct:   11 IKDPSFMKQLDIQELEALAADIRAFLITSTSKSGGHIGPNLGVVELTIALHYTFNSPNDK 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_LEPBL (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LLD I+YP  ++N+  E L Q+  E+R  I++++S  GGH ++NLGVVELT+ALH VF+TP D++
Sbjct:    7 LLDKIDYPADLRNIPLEKLPQVCKEVRNYIIDTLSGVGGHFASNLGVVELTVALHYVFDTPKDRL 71          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_LEPBJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LLD I+YP  ++N+  E L Q+  E+R  I++++S  GGH ++NLGVVELT+ALH VF+TP D++
Sbjct:    7 LLDKIDYPADLRNIPLEKLPQVCKEVRNYIIDTLSGVGGHFASNLGVVELTVALHYVFDTPKDRL 71          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BACLD (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 32/61 (52.46%), Postives = 48/61 (78.69%), Query Frame = 3
Query:  306 TINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            +I  P  +KNLS E+LE L+AE+R  ++ ++S++GGH+  NLGVVELT+ALH+ F++P DK
Sbjct:    5 SIKDPAFLKNLSNEELESLSAEIRRFLIETLSESGGHIGPNLGVVELTIALHKEFDSPKDK 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS2_KITGR (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Kitasatospora griseola GN=dxs2 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 37/65 (56.92%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL  I  P  +  L+   L +LA E+RA +V  VSKTGGHL  NLGVVELTLA+HRVF++P D+I
Sbjct:    3 LLTRIRGPRDLDRLTPAQLAELAEEIRAFLVEEVSKTGGHLGPNLGVVELTLAMHRVFDSPRDRI 67          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS1_GEOSL (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geobacter sulfurreducens GN=dxs1 PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.229e-12
Identity = 33/64 (51.56%), Postives = 49/64 (76.56%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            LLDTI  P  +K + ++ L  LA E+RA ++ +VS+TGGHL++NLGVVEL++ALH  F++P D+
Sbjct:    4 LLDTITCPADLKKIPRDQLPALAEEIRAFLLETVSRTGGHLASNLGVVELSIALHYCFDSPTDR 67          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_SACEN (1-deoxy-D-xylulose-5-phosphate synthase OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 32/65 (49.23%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL+++  P  +K L   +L +LAAE+R+ ++  VS+TGGHL  NLG +ELTLA+HRVF++P D +
Sbjct:    3 LLESVQSPADVKRLEHGELAKLAAEIRSFLIEKVSRTGGHLGPNLGAIELTLAVHRVFDSPRDAV 67          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSYIN (1-deoxy-D-xylulose-5-phosphate synthase OS=Psychromonas ingrahamii (strain 37) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  INYP  ++ L KE L     ELR+ ++N+VS+T GHL++ LGVVELT+ALH ++ TP D +
Sbjct:    9 PLLTNINYPEDLRLLKKEQLPAFCNELRSFLLNTVSQTSGHLASGLGVVELTVALHYIYRTPFDNL 74          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_BACSK9.407e-1351.561-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_ALKOO9.407e-1357.381-deoxy-D-xylulose-5-phosphate synthase OS=Alkalip... [more]
DXS_LISIN1.229e-1256.671-deoxy-D-xylulose-5-phosphate synthase OS=Listeri... [more]
DXS_LEPBL1.229e-1250.771-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp... [more]
DXS_LEPBJ1.229e-1250.771-deoxy-D-xylulose-5-phosphate synthase OS=Leptosp... [more]
DXS_BACLD1.229e-1252.461-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS2_KITGR1.229e-1256.921-deoxy-D-xylulose-5-phosphate synthase 2 OS=Kitas... [more]
DXS1_GEOSL1.229e-1251.561-deoxy-D-xylulose-5-phosphate synthase 1 OS=Geoba... [more]
DXS_SACEN1.605e-1249.231-deoxy-D-xylulose-5-phosphate synthase OS=Sacchar... [more]
DXS_PSYIN1.605e-1251.521-deoxy-D-xylulose-5-phosphate synthase OS=Psychro... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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