CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BACP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus pumilus (strain SAFR-032) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.774e-11
Identity = 29/61 (47.54%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  306 TINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            +I  P  +K +S  +LE+L+A++R  ++ S++ +GGH+  NLGVVELT+ALH+VF++P DK
Sbjct:    5 SIKNPTFLKGMSNAELEELSADIRMFLIESLANSGGHIGPNLGVVELTVALHKVFDSPKDK 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_SYMTH (1-deoxy-D-xylulose-5-phosphate synthase OS=Symbiobacterium thermophilum GN=dxs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.317e-11
Identity = 34/58 (58.62%), Postives = 44/58 (75.86%), Query Frame = 3
Query:  318 PIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P  +K L+  +L QLAAE+R  I+ +V+  GGHL+ NLGVVELTLALH VF++P DKI
Sbjct:    9 PEQLKRLAPAELAQLAAEIRRVILETVATNGGHLAPNLGVVELTLALHIVFDSPRDKI 66          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_CHLAB (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydophila abortus GN=dxs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.317e-11
Identity = 31/64 (48.44%), Postives = 48/64 (75.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            +L  I+ P  +K LS  +L  LA ++R  I++ + KTGGHL++NLG++ELT+ALH VF++P+DK
Sbjct:    8 ILSQISSPEDLKKLSCSELSLLAEQIRHKIISVLIKTGGHLASNLGIIELTIALHYVFSSPEDK 71          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_ALHEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.317e-11
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  +  P  ++ L    L  LA ELR  +++SV+++GGHL+A LG VELTLALH VFNTP+D++
Sbjct:    9 PLLAQVPDPEALRTLPAHRLPALAKELRHYLLHSVARSGGHLAAGLGAVELTLALHYVFNTPEDRL 74          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_VIBPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio parahaemolyticus GN=dxs PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P L   N P  ++ L KE L  L  ELR  ++NSVS++ GHL++ LG VELT+ALH V+NTP DK+
Sbjct:    9 PTLALANTPEELRLLPKETLPTLCDELRTYLLNSVSQSSGHLASGLGTVELTVALHYVYNTPVDKL 74          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_CARHZ (1-deoxy-D-xylulose-5-phosphate synthase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 3.952e-11
Identity = 34/66 (51.52%), Postives = 44/66 (66.67%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P+L+ I+ P  +K L   +L  LA ELR  I+   S+ GGHL+ +LGVVELT+ALH VF  P DKI
Sbjct:    3 PILERISLPEDIKKLKPSELMALAQELREYIITVASQNGGHLAPSLGVVELTIALHFVFEAPKDKI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_THERP (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.162e-11
Identity = 36/65 (55.38%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  300 LDTINYPIHMKNLSKEDLEQLAAELRADIVNSV-SKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            L+ I+ P  +K LS  +LE+LA E+R  I+  V  KTGGH + NLG VELTLALH VF++P DKI
Sbjct:    3 LERIDSPQDLKRLSVPELEKLAEEIREAIIEVVLGKTGGHFAPNLGTVELTLALHYVFDSPRDKI 67          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_FRATM (1-deoxy-D-xylulose-5-phosphate synthase OS=Francisella tularensis subsp. mediasiatica (strain FSC147) GN=dxs PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.742e-11
Identity = 31/65 (47.69%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +LD IN P  +K + +  L+ L+AELRA +V+++  +GGH +++LG  ELT+ALH V+N PDD I
Sbjct:    6 ILDKINTPSDLKLIPESQLKILSAELRAFLVDTLDVSGGHFASSLGATELTVALHYVYNAPDDNI 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_CLONN (1-deoxy-D-xylulose-5-phosphate synthase OS=Clostridium novyi (strain NT) GN=dxs PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.742e-11
Identity = 30/55 (54.55%), Postives = 44/55 (80.00%), Query Frame = 3
Query:  327 MKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            ++ +S  DL++ A E+R  ++N +SKTGGHL++NLGVVELTLAL++VF+   DKI
Sbjct:   14 LRKMSFSDLDKFAQEIRNFLINKISKTGGHLASNLGVVELTLALYKVFDLDKDKI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_CHLMU (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlamydia muridarum GN=dxs PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 6.742e-11
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            +PLL  I+ P  +++LS + L  L  E+R  I+ ++S TGGHL++NLG+VELT+ALH VF +P+D+
Sbjct:    3 SPLLQHISSPQKLRSLSLDQLPLLCDEIRNRIIATLSLTGGHLASNLGIVELTVALHYVFASPEDQ 68          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_BACP21.774e-1147.541-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_SYMTH2.317e-1158.621-deoxy-D-xylulose-5-phosphate synthase OS=Symbiob... [more]
DXS_CHLAB2.317e-1148.441-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]
DXS_ALHEH2.317e-1151.521-deoxy-D-xylulose-5-phosphate synthase OS=Alkalil... [more]
DXS_VIBPA3.952e-1151.521-deoxy-D-xylulose-5-phosphate synthase OS=Vibrio ... [more]
DXS_CARHZ3.952e-1151.521-deoxy-D-xylulose-5-phosphate synthase OS=Carboxy... [more]
DXS_THERP5.162e-1155.381-deoxy-D-xylulose-5-phosphate synthase OS=Thermom... [more]
DXS_FRATM6.742e-1147.691-deoxy-D-xylulose-5-phosphate synthase OS=Francis... [more]
DXS_CLONN6.742e-1154.551-deoxy-D-xylulose-5-phosphate synthase OS=Clostri... [more]
DXS_CHLMU6.742e-1148.481-deoxy-D-xylulose-5-phosphate synthase OS=Chlamyd... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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