CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BACCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=dxs PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.805e-11
Identity = 29/63 (46.03%), Postives = 47/63 (74.60%), Query Frame = 3 
Query:  300 LDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            L  I  P  +K++S  +LE+L+ ++R  ++  +S+TGGH++ NLGVVELT+ALH +F++P DK
Sbjct:    3 LTQIQNPSFLKDMSISELEELSEDIRKFLIEELSQTGGHIAPNLGVVELTIALHTLFDSPKDK 65
[Close]
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BACC4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain B4264) GN=dxs PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.805e-11
Identity = 29/63 (46.03%), Postives = 47/63 (74.60%), Query Frame = 3 
Query:  300 LDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            L  I  P  +K++S  +LE L+ ++R  ++  +S+TGGH++ NLGVVELT+ALH++F++P DK
Sbjct:    3 LTQIQNPSFLKDMSISELEGLSEDIRKFLIEELSQTGGHIAPNLGVVELTIALHKLFDSPQDK 65
[Close]
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BACC2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus cereus (strain G9842) GN=dxs PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 8.805e-11
Identity = 29/63 (46.03%), Postives = 47/63 (74.60%), Query Frame = 3 
Query:  300 LDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            L  I  P  +K++S  +LE L+ ++R  ++  +S+TGGH++ NLGVVELT+ALH++F++P DK
Sbjct:    3 LTQIQNPSFLKDMSISELEGLSEDIRKFLIEELSQTGGHIAPNLGVVELTIALHKLFDSPQDK 65
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_BACCN8.805e-1146.031-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_BACC48.805e-1146.031-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_BACC28.805e-1146.031-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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