CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BRUA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus (strain 2308) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.402e-16
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 3
Query:  282 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +P TPLLD    P  ++ L ++DL QLA ELR +++++VS TGGHL A LGVVELT+ALH VFNTP D+I
Sbjct:    3 RPSTPLLDKAPTPDRLRALPEQDLPQLAEELRTELIDAVSTTGGHLGAGLGVVELTVALHHVFNTPYDRI 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BRUA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Brucella abortus (strain S19) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.402e-16
Identity = 41/70 (58.57%), Postives = 53/70 (75.71%), Query Frame = 3
Query:  282 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +P TPLLD    P  ++ L ++DL QLA ELR +++++VS TGGHL A LGVVELT+ALH VFNTP D+I
Sbjct:    3 RPSTPLLDKAPTPDRLRALPEQDLPQLAEELRTELIDAVSTTGGHLGAGLGVVELTVALHHVFNTPYDRI 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_LARHH (1-deoxy-D-xylulose-5-phosphate synthase OS=Laribacter hongkongensis (strain HLHK9) GN=dxs PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.832e-16
Identity = 39/67 (58.21%), Postives = 53/67 (79.10%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            TPLLDTI  P  ++ L ++ L QLA ELR  +V+SVS+TGGH ++NLG +ELT+ALH V+NTPDD++
Sbjct:    4 TPLLDTIQIPADLRELDRKQLPQLARELRDFLVDSVSQTGGHFASNLGSIELTIALHYVYNTPDDRL 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_POLNA (1-deoxy-D-xylulose-5-phosphate synthase OS=Polaromonas naphthalenivorans (strain CJ2) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.392e-16
Identity = 40/65 (61.54%), Postives = 53/65 (81.54%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL+TIN P  ++ L +  L+ LA ELRA +++SVS+TGGHLS+NLG VELT+ALH VFNTPDD++
Sbjct:    4 LLETINSPADLRRLPRAQLKALADELRAYVIDSVSQTGGHLSSNLGTVELTVALHYVFNTPDDRL 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_NOVAD (1-deoxy-D-xylulose-5-phosphate synthase OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.392e-16
Identity = 37/71 (52.11%), Postives = 55/71 (77.46%), Query Frame = 3
Query:  279 EKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            ++P TPLLDT+  P  ++ L+   L QLA ELR +++++V +TGGHL + LGVVELT+A+H VFNTP+D++
Sbjct:    3 QEPATPLLDTVKTPDDLRKLAPTQLRQLADELRVEMISAVGQTGGHLGSGLGVVELTVAIHYVFNTPEDRL 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MARMM (1-deoxy-D-xylulose-5-phosphate synthase OS=Maricaulis maris (strain MCS10) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 2.392e-16
Identity = 40/69 (57.97%), Postives = 52/69 (75.36%), Query Frame = 3
Query:  285 PPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P TP+LDT+N P  +KNL  + L+ LA E+RA+ +++VS TGGHL A LGVVELT ALH VF+TP D +
Sbjct:    5 PKTPILDTVNSPADLKNLPLDRLKSLADEVRAETIDAVSVTGGHLGAGLGVVELTTALHHVFDTPTDTL 73          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEPW (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas putida (strain W619) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 38/75 (50.67%), Postives = 55/75 (73.33%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   E+P TPLLD  + P  ++ L++ DLE LA ELR +++ +V +TGGH  A LGV+ELT+ALH VF+TPDD++
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLEHLADELRQELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTPDD+I
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTPDD+I
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BURP6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 668) GN=dxs PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 3.124e-16
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL TI+ P  ++ L +  L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTPDD+I
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRI 68          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_BRUA21.402e-1658.571-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_BRUA11.402e-1658.571-deoxy-D-xylulose-5-phosphate synthase OS=Brucell... [more]
DXS_LARHH1.832e-1658.211-deoxy-D-xylulose-5-phosphate synthase OS=Laribac... [more]
DXS_POLNA2.392e-1661.541-deoxy-D-xylulose-5-phosphate synthase OS=Polarom... [more]
DXS_NOVAD2.392e-1652.111-deoxy-D-xylulose-5-phosphate synthase OS=Novosph... [more]
DXS_MARMM2.392e-1657.971-deoxy-D-xylulose-5-phosphate synthase OS=Maricau... [more]
DXS_PSEPW3.124e-1650.671-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_BURTA3.124e-1663.081-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURPS3.124e-1663.081-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURP63.124e-1663.081-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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